RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 PCDHGA7Q9Y5G6 932 aa10.65□□□□□ -0.7
LIMCH1-208ENST00000508501 TET3O43151 1660 aa10.65□□□□□ -0.71
LIMCH1-208ENST00000508501 LOC102723532A0A0G2JNH3 316 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 TCRBV3S1A0A5B6 114 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 NPIPA2E9PIF3 369 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 NPIPA3F8WFD2 350 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SYT7O43581 403 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SULT1C4O75897 302 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 ZBTB7AO95365 584 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 GIPP09681 153 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 DPEP1P16444 411 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 TRHRP34981 398 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 PCGF2P35227 344 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 WDR5P61964 334 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 ACSM3Q53FZ2 586 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 CD300LGQ6UXG3 332 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 GDPD4Q6W3E5 623 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SLC7A6Q92536 515 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 TFGQ92734 400 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 MR1Q95460 341 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 EMID1Q96A84 441 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 ZCCHC4Q9H5U6 513 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 METTL7AQ9H8H3 244 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 ZNF395Q9H8N7 513 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 FBRSL1Q9HCM7 1045 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 GAR1Q9NY12 217 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SLC27A5Q9Y2P5 690 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 ETV7Q9Y603 341 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 ANKRD66B4E2M5 251 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 ARNTLO00327 626 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SAP18O00422 153 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 DVL2O14641 736 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 B4GALT5O43286 388 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 FGF4P08620 206 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 TMEM225BP0DP42 221 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 JUNBP17275 347 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 CPT2P23786 658 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SSTR2P30874 369 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 OR1D2P34982 312 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 ERVK-21P61565 698 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 EMX1Q04741 257 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 TNK1Q13470 666 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 GPR50Q13585 617 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 HNF4GQ14541 408 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 DCAF12L1Q5VU92 463 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 CPZQ66K79 652 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 HBMQ6B0K9 141 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SPATC1Q76KD6 591 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 NPAS4Q8IUM7 802 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SLC35F2Q8IXU6 374 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 LSMEM2Q8N112 164 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 BPIFB2Q8N4F0 458 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 IL17RDQ8NFM7 739 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 TFAP2BQ92481 460 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 ZBTB20Q9HC78 741 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SDR39U1Q9NRG7 319 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SURF4O15260 269 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 EPHX1P07099 455 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SHMT2P34897 504 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SELENOWP63302 87 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 EEF1A2Q05639 463 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 ZNF691Q5VV52 312 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 STEAP4Q687X5 459 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 INTS5Q6P9B9 1019 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 OPN5Q6U736 354 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 NHLRC2Q8NBF2 726 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 FBXO22Q8NEZ5 403 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 OR51T1Q8NGJ9 327 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 OR51A7Q8NH64 312 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SPRYD4Q8WW59 207 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SYNPO2LQ9H987 977 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 BABAM2Q9NXR7 383 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 TAC3Q9UHF0 121 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 BTNL2Q9UIR0 455 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 PCDHB10Q9UN67 800 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 USP32Q8NFA0 1604 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 TCRBV7S3A2A0A539 114 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 CST3P01034 146 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 MMP3P08254 477 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 ITGB5P18084 799 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 ENDOGQ14249 297 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 RBM39Q14498 530 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 ADAM5Q6NVV9 412 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 PIWIL3Q7Z3Z3 882 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 DEFB128Q7Z7B8 93 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SERPINA11Q86U17 422 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 PDZD3Q86UT5 571 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 OR5D14Q8NGL3 314 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 OR14C36Q8NHC7 312 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 GGHQ92820 318 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 SPTSSAQ969W0 71 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 NSUN3Q9H649 340 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 PCDHGA6Q9Y5G7 932 aa10.64□□□□□ -0.71
LIMCH1-208ENST00000508501 TMEM72A0PK05 275 aa10.63□□□□□ -0.71
LIMCH1-208ENST00000508501 C6P13671 934 aa10.63□□□□□ -0.71
LIMCH1-208ENST00000508501 GABRA5P31644 462 aa10.63□□□□□ -0.71
LIMCH1-208ENST00000508501 EEF1A1P68104 462 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-208ENST00000508501 SP2Q02086 613 aa10.63□□□□□ -0.71
LIMCH1-208ENST00000508501 ARHGAP40Q5TG30 622 aa10.63□□□□□ -0.71
LIMCH1-208ENST00000508501 EEF1A1P5Q5VTE0 462 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms