RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 APOBEC3BQ9UH17 382 aaKnown RBP12.59□□□□□ -0.39
GPC1-209ENST00000495100 ZNF346Q9UL40 294 aaKnown RBP12.59□□□□□ -0.39
GPC1-209ENST00000495100 AK6Q9Y3D8 172 aaKnown RBP12.59□□□□□ -0.39
GPC1-209ENST00000495100 SNRNP200O75643 2136 aaKnown RBP12.59□□□□□ -0.39
GPC1-209ENST00000495100 TMEM229AB2RXF0 380 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 FOXE1O00358 373 aaPredicted RBP12.59□□□□□ -0.39
GPC1-209ENST00000495100 LINC01565O15544 149 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 VEGFDO43915 354 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 RDH16O75452 317 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 SLC36A4Q6YBV0 504 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 FRRS1Q6ZNA5 592 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 OR52E4Q8NGH9 312 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 RBM18Q96H35 190 aaKnown RBP12.59□□□□□ -0.39
GPC1-209ENST00000495100 PEX11GQ96HA9 241 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 GNG8Q9UK08 70 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 PLXND1Q9Y4D7 1925 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 TRIM64A6NGJ6 449 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 SOBPA7XYQ1 873 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 H7C1C5 153 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 LCN6P62502 163 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 KRR1Q13601 381 aaKnown RBP12.59□□□□□ -0.39
GPC1-209ENST00000495100 LCTLQ6UWM7 567 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 LYPD4Q6UWN0 246 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 CRIPAKQ8N1N5 446 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 SLC37A3Q8NCC5 494 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 OR7G2Q8NG99 324 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 OR8D4Q8NGM9 314 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 FGF14Q92915 247 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 PLA2G2FQ9BZM2 168 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 SLC22A4Q9H015 551 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 GALNT9Q9HCQ5 603 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 SRA1Q9HD15 236 aaKnown RBP12.59□□□□□ -0.39
GPC1-209ENST00000495100 PAK6Q9NQU5 681 aaPredicted RBP12.59□□□□□ -0.39
GPC1-209ENST00000495100 FBXO8Q9NRD0 319 aa12.59□□□□□ -0.39
GPC1-209ENST00000495100 TPRP12270 2363 aaKnown RBP12.58□□□□□ -0.39
GPC1-209ENST00000495100 LOC100509620A0A075B734 347 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 MEIS3P1A6NDR6 274 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 H3BQ06 376 aaPredicted RBP12.58□□□□□ -0.4
GPC1-209ENST00000495100 PRKAR1AP10644 381 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 CHRNB1P11230 501 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 ZMYND11Q15326 602 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 KLHL22Q53GT1 634 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 OAFQ86UD1 273 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 KLHL36Q8N4N3 616 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 OR52E2Q8NGJ4 325 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 FANK1Q8TC84 345 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 SLC25A36Q96CQ1 311 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 ERMAPQ96PL5 475 aaPredicted RBP12.58□□□□□ -0.4
GPC1-209ENST00000495100 CD180Q99467 661 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 ABCG5Q9H222 651 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 A4GNTQ9UNA3 340 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 CFAP54Q96N23 3096 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 DDX6P26196 483 aaKnown RBP eCLIP12.58□□□□□ -0.4
GPC1-209ENST00000495100 SSTR2P30874 369 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 DCDC1P59894 354 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 RPL6Q02878 288 aaKnown RBP12.58□□□□□ -0.4
GPC1-209ENST00000495100 E2F2Q14209 437 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 DUSP5Q16690 384 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 C9orf50Q5SZB4 431 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 AGAP6Q5VW22 663 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 PRSS45Q7RTY3 260 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 PLPP6Q8IY26 295 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 LAS2Q8IYD9 372 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 OR2L3Q8NG85 312 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 OR4K14Q8NGD5 310 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 OR4C15Q8NGM1 316 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 AGAP4Q96P64 663 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 PITX2Q99697 317 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 ENKD1Q9H0I2 346 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 ENAMQ9NRM1 1142 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 SIRT3Q9NTG7 399 aaPredicted RBP12.58□□□□□ -0.4
GPC1-209ENST00000495100 MRPS2Q9Y399 296 aaKnown RBP12.58□□□□□ -0.4
GPC1-209ENST00000495100 SPACA6W5XKT8 324 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 A8MVJ9 347 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 PRR23D1E9PI22 279 aaPredicted RBP12.58□□□□□ -0.4
GPC1-209ENST00000495100 AKR7A2O43488 359 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 B3GALT2O43825 422 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 CSN2P05814 226 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 PRR23D2P0DMB1 279 aaPredicted RBP12.58□□□□□ -0.4
GPC1-209ENST00000495100 FOXL2P58012 376 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 DSG2Q14126 1118 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 TATDN3Q17R31 274 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 BTBD16Q32M84 506 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 METRNLQ641Q3 311 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 OR5M10Q6IEU7 315 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 WFIKKN2Q8TEU8 576 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 SETD7Q8WTS6 366 aaKnown RBP12.58□□□□□ -0.4
GPC1-209ENST00000495100 ZNF566Q969W8 418 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 MSLNLQ96KJ4 702 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 CNDP2Q96KP4 475 aaKnown RBP12.58□□□□□ -0.4
GPC1-209ENST00000495100 GABARAPL1Q9H0R8 117 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 IRF2BPLQ9H1B7 796 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 TMEM38AQ9H6F2 299 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 SLC28A3Q9HAS3 691 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 C20orf141Q9NUB4 165 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 FTSJ1Q9UET6 329 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 B3GNT3Q9Y2A9 372 aa12.58□□□□□ -0.4
GPC1-209ENST00000495100 A0A0A6YYC8 382 aaPredicted RBP12.57□□□□□ -0.4
GPC1-209ENST00000495100 I3L1I5 382 aaPredicted RBP12.57□□□□□ -0.4
GPC1-209ENST00000495100 PLGP00747 810 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms