RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 KIAA1217Q5T5P2 1943 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ASXL3Q9C0F0 2248 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 LRRK2Q5S007 2527 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 NF1P21359 2839 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 AKAP13Q12802 2813 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ANKRD36CQ5JPF3 1778 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 COL11A1P12107 1806 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 A0A1B0GTQ1 180 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 IQCMA0A1B0GVH7 501 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 A0A1W2PR80 420 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 HEATR9A2RTY3 570 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CTAGE15A4D2H0 777 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF98A6NK75 572 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 A8MU76 341 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 KRTAP16-1A8MUX0 517 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 SNURFLB1AK76 121 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 LINC00587B1AMM8 73 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 FPGTO14772 594 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 RASGRF2O14827 1237 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 TFECO14948 347 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 POLR1CO15160 346 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ALOX15BO15296 676 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 TM9SF1O15321 606 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 NUPL2O15504 423 aaKnown RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 GATCO43716 136 aaKnown RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 TADA2AO75478 443 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CABYRO75952 493 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 SEMA3DO95025 777 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 PGM3O95394 542 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ACSL3O95573 720 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 HPRP00739 348 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 MMP1P03956 469 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 DNTTP04053 509 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 LYNP07948 512 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 GSTA1P08263 222 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 KRT16P08779 473 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 IQCF3P0C7M6 154 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 POLR2MP0CAP2 368 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 OCM2P0CE71 109 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 OCMP0CE72 109 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 AKR1B1P15121 316 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ATP6V1B1P15313 513 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 GAP43P17677 238 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ERCC2P18074 760 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CYP3A5P20815 502 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CYP2A7P20853 494 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CALB2P22676 271 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 OXTRP30559 389 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 GTF2H1P32780 548 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CDH5P33151 784 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 SFTPDP35247 375 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 HSD17B3P37058 310 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CAPGP40121 348 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 MTIF2P46199 727 aaKnown RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 HCAR3P49019 387 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 HNRNPFP52597 415 aaKnown RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 AIF1P55008 147 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CASP9P55211 416 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 XGP55808 180 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 YBEYP58557 167 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 RAB14P61106 215 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 NCALDP61601 193 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 IFITM2Q01629 132 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 IL1RL1Q01638 556 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 LIPEQ05469 1076 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 FCHO2Q0JRZ9 810 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 SCRN3Q0VDG4 424 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ILF2Q12905 390 aaKnown RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ABRQ12979 859 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 SRSF5Q13243 272 aaKnown RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ENPP2Q13822 863 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 GRB14Q14449 540 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 MXD4Q14582 209 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 TMEM132DQ14C87 1099 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 C16orf72Q14CZ0 275 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 KARSQ15046 597 aaKnown RBP1.83□□□□□ -2.12
HMGB1-208ENST00000490788 NCF4Q15080 339 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 VWC2Q2TAL6 325 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ZCWPW2Q504Y3 356 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 FBXO48Q5FWF7 155 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 KRBOX4Q5JUW0 171 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CDKL4Q5MAI5 379 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 C1orf146Q5VVC0 180 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CST9LP1Q5W188 147 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 PDPK2PQ6A1A2 396 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 TCEAL6Q6IPX3 200 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 NIPAL1Q6NVV3 410 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 LCLAT1Q6UWP7 414 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CXCL17Q6UXB2 119 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ISLR2Q6UXK2 745 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 RGS9BPQ6ZS82 235 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 BNIPLQ7Z465 357 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ADAMTSL2Q86TH1 951 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 TLK2Q86UE8 772 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 CTAGE6Q86UF2 777 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 AMIGO1Q86WK6 493 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 WDR49Q8IV35 697 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 IFT20Q8IY31 132 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF619Q8N2I2 560 aa1.83□□□□□ -2.12
HMGB1-208ENST00000490788 KIF2BQ8N4N8 673 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms