RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 KIR2DL2P43627 348 aaPredicted RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 SLC1A6P48664 564 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 CEBPDP49716 269 aaPredicted RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 FHITP49789 147 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 ZNF140P52738 457 aaPredicted RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 GFRA1P56159 465 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 VSX2P58304 361 aaPredicted RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 ZNF33BQ06732 778 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 MGAT5Q09328 741 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 RASGEF1BQ0VAM2 473 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 MAB21L1Q13394 359 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 SNTB2Q13425 540 aaKnown RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 LARS2Q15031 903 aaKnown RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 CDSNQ15517 529 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 PAGE2BQ5JRK9 111 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 LCE4AQ5TA78 99 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 C6orf163Q5TEZ5 329 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 SPATA19Q7Z5L4 167 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 CAMKMTQ7Z624 323 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 TGIF2LYQ8IUE0 185 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 CNGA4Q8IV77 575 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 RHOT2Q8IXI1 618 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 CLEC4FQ8N1N0 589 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 GHDCQ8N2G8 530 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 GALNT4Q8N4A0 578 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 COMMD1Q8N668 190 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 ZNF781Q8N8C0 355 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 FNDC5Q8NAU1 212 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 TMEM178AQ8NBL3 297 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 OR2L8Q8NGY9 312 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 FANK1Q8TC84 345 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 AGAP11Q8TF27 550 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 DUSP19Q8WTR2 217 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 ASB5Q8WWX0 329 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 RGMAQ96B86 450 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 SLC25A36Q96CQ1 311 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 SNX22Q96L94 193 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 ZNF354BQ96LW1 612 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 CCDC42Q96M95 316 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 PPP1R2P1Q96PQ5 205 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 FOXC2Q99958 501 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 ZNF559Q9BR84 538 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 TINAGL1Q9GZM7 467 aaPredicted RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 TRIM45Q9H8W5 580 aaPredicted RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 FAM212BQ9NTI7 297 aaPredicted RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 FBXO34Q9NWN3 711 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 GFOD1Q9NXC2 390 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 PSMC3IPQ9P2W1 217 aaPredicted RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 SAE1Q9UBE0 346 aaPredicted RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 TNFRSF10DQ9UBN6 386 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 PEF1Q9UBV8 284 aaKnown RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 FBXW2Q9UKT8 454 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 PLAGL1Q9UM63 463 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 NPIPA1Q9UND3 350 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 RUVBL2Q9Y230 463 aaKnown RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 SAMHD1Q9Y3Z3 626 aaKnown RBP6.3□□□□□ -1.4
HDAC3-209ENST00000486618 DNAJC13O75165 2243 aa6.3□□□□□ -1.4
HDAC3-209ENST00000486618 HEATR5BQ9P2D3 2071 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 MAP1AP78559 2803 aaPredicted RBP6.29□□□□□ -1.4
HDAC3-209ENST00000486618 LOC102723996A0A087X1L8 192 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 SLC5A10A0PJK1 596 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 ZNF839A8K0R7 811 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 C12orf71A8MTZ7 269 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 A8MUI8 341 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 SHOXO15266 292 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 SLC16A6O15403 523 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 AKR7A2O43488 359 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 DENRO43583 198 aaKnown RBP6.29□□□□□ -1.4
HDAC3-209ENST00000486618 TBX19O60806 448 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 B4GALT2O60909 372 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 SERPINI2O75830 405 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 SUN1O94901 812 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 RPP14O95059 124 aaKnown RBP6.29□□□□□ -1.4
HDAC3-209ENST00000486618 SERPINA3P01011 423 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 OR56A5P0C7T3 313 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 MLNP12872 115 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 KLK2P20151 261 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 RAB4AP20338 218 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 ADRA1AP35348 466 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 SLC1A1P43005 524 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 IST1P53990 364 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 FOLH1Q04609 750 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 GLO1Q04760 184 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 MERTKQ12866 999 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 OLIG2Q13516 323 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 ITIH4Q14624 930 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 PCOLCEQ15113 449 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 MED22Q15528 200 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 TAZQ16635 292 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 PRICKLE4Q2TBC4 344 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 CDONQ4KMG0 1287 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 KCTD11Q693B1 232 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 TMEM211Q6ICI0 200 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 RNF44Q7L0R7 432 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 DOLPP1Q86YN1 238 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 DCUN1D3Q8IWE4 304 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 FOXRED2Q8IWF2 684 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 CLYBLQ8N0X4 340 aa6.29□□□□□ -1.4
HDAC3-209ENST00000486618 RAB42Q8N4Z0 105 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms