RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ACKR4Q9NPB9 350 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 PNPLA3Q9NST1 481 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 DKKL1Q9UK85 242 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 FBXL2Q9UKC9 423 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 ACAD8Q9UKU7 415 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 SLC6A5Q9Y345 797 aa13.45□□□□□ -0.26
USP4-212ENST00000486549 NPIPA5A0A0B4J1W7 369 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 A1L4Q6 167 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 FAM234BA2RU67 622 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 CCDC154A6NI56 674 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 NPIPA7E9PJI5 369 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 GMFGO60234 142 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 CBR3O75828 277 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 OXSR1O95747 527 aaPredicted RBP13.44□□□□□ -0.26
USP4-212ENST00000486549 ANGPTL1O95841 491 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 VIMP08670 466 aaKnown RBP13.44□□□□□ -0.26
USP4-212ENST00000486549 NPIPA8P0DM63 369 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 RNF144AP50876 292 aaPredicted RBP13.44□□□□□ -0.26
USP4-212ENST00000486549 LRRC74AQ0VAA2 488 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 SF3A3Q12874 501 aaKnown RBP eCLIP13.44□□□□□ -0.266e-7■■■■■ 26.8
USP4-212ENST00000486549 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.44□□□□□ -0.26
USP4-212ENST00000486549 GXYLT1Q4G148 440 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 SAXO2Q658L1 398 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 ZNF585AQ6P3V2 769 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 TNFAIP8L2Q6P589 184 aaPredicted RBP13.44□□□□□ -0.26
USP4-212ENST00000486549 TRIML2Q8N7C3 387 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 GATSQ8NAP1 163 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 OR4C3Q8NH37 302 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 OR14L1PQ8NHC6 308 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 GOT1L1Q8NHS2 421 aaPredicted RBP13.44□□□□□ -0.26
USP4-212ENST00000486549 RAB8BQ92930 207 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 DSN1Q9H410 356 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 RUBCNLQ9H714 662 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 SDHAF3Q9NRP4 125 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 FGFR1OP2Q9NVK5 253 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 ALKBH4Q9NXW9 302 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 MED11Q9P086 117 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 MEMO1Q9Y316 297 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 PCDHGB3Q9Y5G1 929 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 DOPEY1Q5JWR5 2465 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 NAV2Q8IVL1 2488 aa13.44□□□□□ -0.26
USP4-212ENST00000486549 ICE1Q9Y2F5 2266 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 OR14I1A6ND48 311 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 B4DXG7 233 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 NR5A2O00482 541 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 RFXANKO14593 260 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 ADAM10O14672 748 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 BCKDKO14874 412 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 ANP32DO95626 131 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 C1QCP02747 245 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 OR12D1P0DN82 309 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 HPGDP15428 266 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 NCF2P19878 526 aaPredicted RBP13.43□□□□□ -0.26
USP4-212ENST00000486549 TBXA2RP21731 343 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 KHKP50053 298 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 EMC4Q5J8M3 183 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 C6orf10Q5SRN2 563 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 WLSQ5T9L3 541 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 APOOLQ6UXV4 268 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 OLIG3Q7RTU3 272 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 C16orf62Q7Z3J2 963 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 EID3Q8N140 333 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 PNPT1Q8TCS8 783 aaKnown RBP13.43□□□□□ -0.26
USP4-212ENST00000486549 DUSP19Q8WTR2 217 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 NEURL3Q96EH8 262 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 TP63Q9H3D4 680 aaPredicted RBP13.43□□□□□ -0.26
USP4-212ENST00000486549 RMND5AQ9H871 391 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 CCDC167Q9P0B6 97 aa13.43□□□□□ -0.26
USP4-212ENST00000486549 MED12Q93074 2177 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 PCNX3Q9H6A9 2034 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 DUXAA6NLW8 204 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 SCDO00767 359 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 NDUFB5O43674 189 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 TROVE2P10155 538 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP4-212ENST00000486549 DPP4P27487 766 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 SRD5A2P31213 254 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 GCKP35557 465 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 DCTP40126 519 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 MRPL19P49406 292 aaKnown RBP13.42□□□□□ -0.26
USP4-212ENST00000486549 SQLEQ14534 574 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 GTDC1Q4AE62 458 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 FLYWCH1Q4VC44 716 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 AGKQ53H12 422 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 SLC2A7Q6PXP3 512 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 RPTNQ6XPR3 784 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 IFNEQ86WN2 208 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 RNF130Q86XS8 419 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 RPRMLQ8N4K4 120 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 ZNF614Q8N883 585 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 OR2M3Q8NG83 312 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 XAGE5Q8WWM1 108 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 DTNBP1Q96EV8 351 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 ITCHQ96J02 903 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 SIKE1Q9BRV8 207 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 TMEM120AQ9BXJ8 343 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 OR2B2Q9GZK3 357 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 UBQLN4Q9NRR5 601 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 SLC6A13Q9NSD5 602 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 EXD2Q9NVH0 621 aa13.42□□□□□ -0.26
USP4-212ENST00000486549 TAS2R10Q9NYW0 307 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms