RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 SIMC1Q8NDZ2 872 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 CHDHQ8NE62 594 aaPredicted RBP7.58□□□□□ -1.2
SF3A1-208ENST00000485618 OR4K17Q8NGC6 315 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 OR4N2Q8NGD1 307 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 FBXO30Q8TB52 745 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 GRHL3Q8TE85 626 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 NR4A3Q92570 626 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 HGDQ93099 445 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 EFHD2Q96C19 240 aaPredicted RBP7.58□□□□□ -1.2
SF3A1-208ENST00000485618 SNRNP40Q96DI7 357 aaKnown RBP7.58□□□□□ -1.2
SF3A1-208ENST00000485618 TMEM41AQ96HV5 264 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 ZNF607Q96SK3 696 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 SDF2Q99470 211 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 CGREF1Q99674 301 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 ECSITQ9BQ95 431 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 PAIP1Q9H074 479 aaKnown RBP7.58□□□□□ -1.2
SF3A1-208ENST00000485618 LDAHQ9H6V9 325 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 EXO5Q9H790 373 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 SH2D2AQ9NP31 389 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 PPP4R1LQ9P1A2 415 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 SEC14L3Q9UDX4 400 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 PLEKHB1Q9UF11 243 aaPredicted RBP7.58□□□□□ -1.2
SF3A1-208ENST00000485618 CNOT11Q9UKZ1 510 aaKnown RBP7.58□□□□□ -1.2
SF3A1-208ENST00000485618 L3MBTL1Q9Y468 752 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 WDR45Q9Y484 360 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 CSAG2Q9Y5P2 127 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 GMEB1Q9Y692 573 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 CPAMD8Q8IZJ3 1885 aa7.58□□□□□ -1.2
SF3A1-208ENST00000485618 TNRC6AQ8NDV7 1962 aaKnown RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 A0A0G2JPF8 293 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 A0A1W2PQD3 144 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 HNRNPCL2B2RXH8 293 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 HNRNPCL3B7ZW38 293 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 NPIPA5E9PKD4 350 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 AIM2O14862 343 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 HCN1O60741 890 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 ZNF354AO60765 605 aaPredicted RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 HNRNPCL1O60812 293 aaKnown RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 GMNNO75496 209 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 TRAPPC6AO75865 159 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 PDE9AO76083 593 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 IFNA14P01570 189 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 DBIP07108 87 aaKnown RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 HNRNPCL4P0DMR1 293 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 COX4I1P13073 169 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 CYP4B1P13584 511 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 CAPN3P20807 821 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 GNLYP22749 145 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 GDF1P27539 372 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 DCTP40126 519 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 CDKN2CP42773 168 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 ZFP36L2P47974 494 aaKnown RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 GPR85P60893 370 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 RPS26P62854 115 aaKnown RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 RBBP4Q09028 425 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 LARS2Q15031 903 aaKnown RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 RGNQ15493 299 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 CYP51A1Q16850 503 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 EXOSC6Q5RKV6 272 aaKnown RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 INTS11Q5TA45 600 aaKnown RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 HEPHL1Q6MZM0 1159 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 ARHGAP11AQ6P4F7 1023 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 AAGABQ6PD74 315 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 LRRC74BQ6ZQY2 392 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 EIF3MQ7L2H7 374 aaKnown RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 WDR53Q7Z5U6 358 aaPredicted RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 ZNF227Q86WZ6 799 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 PLCZ1Q86YW0 608 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 CMIPQ8IY22 773 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 GHDCQ8N2G8 530 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 Q8NA96 180 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 C11orf65Q8NCR3 313 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 GALNT11Q8NCW6 608 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 BHLHE22Q8NFJ8 381 aaPredicted RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 TNIP2Q8NFZ5 429 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 OR8J3Q8NGG0 315 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 OR5D16Q8NGK9 328 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 PNPT1Q8TCS8 783 aaKnown RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 LRRC58Q96CX6 371 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 ANKRD27Q96NW4 1050 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 LUZP4Q9P127 313 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 ARMCX1Q9P291 453 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 SUCOQ9UBS9 1254 aaKnown RBP7.57□□□□□ -1.2
SF3A1-208ENST00000485618 SLC13A4Q9UKG4 626 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 NPIPA1Q9UND3 350 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 SLC35A3Q9Y2D2 325 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 IFT52Q9Y366 437 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 DTNAQ9Y4J8 743 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 WIF1Q9Y5W5 379 aa7.57□□□□□ -1.2
SF3A1-208ENST00000485618 A0A087WZY1 265 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 PRORSD1PA6NEY8 169 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 ALG1L2C9J202 215 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 G3V3Y1 287 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 LINC01387J3KSC0 135 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 HMGN4O00479 90 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 SUSD5O60279 629 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 FADS1O60427 444 aa7.56□□□□□ -1.2
SF3A1-208ENST00000485618 EIF4E2O60573 245 aaKnown RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms