RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TXN2Q99757 166 aa1.82□□□□□ -2.12
VPS50-216ENST00000484954 CD274Q9NZQ7 290 aa1.82□□□□□ -2.12
VPS50-216ENST00000484954 ANKMY1Q9P2S6 941 aa1.82□□□□□ -2.12
VPS50-216ENST00000484954 USP16Q9Y5T5 823 aa1.82□□□□□ -2.12
VPS50-216ENST00000484954 TRBV6-6A0A0A6YYG2 114 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 A0A1W2PQ67 120 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 FBLL1A6NHQ2 334 aaKnown RBP1.81□□□□□ -2.12
VPS50-216ENST00000484954 ERVV-1B6SEH8 477 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 PPIHO43447 177 aaKnown RBP1.81□□□□□ -2.12
VPS50-216ENST00000484954 FMO6PO60774 539 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 NPIPB7O75200 414 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 ZNF324O75467 553 aaPredicted RBP1.81□□□□□ -2.12
VPS50-216ENST00000484954 CABYRO75952 493 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 HSP90AB1P08238 724 aaKnown RBP1.81□□□□□ -2.12
VPS50-216ENST00000484954 CCNA2P20248 432 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 HTR1FP30939 366 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 RPL4P36578 427 aaKnown RBP1.81□□□□□ -2.12
VPS50-216ENST00000484954 RPL29P47914 159 aaKnown RBP1.81□□□□□ -2.12
VPS50-216ENST00000484954 ZSWIM7Q19AV6 140 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 HFEQ30201 348 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 LRIT3Q3SXY7 679 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 AGKQ53H12 422 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 TEX44Q53QW1 395 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 DCST2Q5T1A1 773 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 BTNL3Q6UXE8 466 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 ZNF562Q6V9R5 426 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 STAC2Q6ZMT1 411 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 C17orf82Q86X59 251 aaPredicted RBP1.81□□□□□ -2.12
VPS50-216ENST00000484954 NKAIN3Q8N8D7 197 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 WDR36Q8NI36 951 aaKnown RBP1.81□□□□□ -2.12
VPS50-216ENST00000484954 TADA1Q96BN2 335 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 VPS39Q96JC1 886 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 SPATA13Q96N96 652 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 NDUFAF3Q9BU61 184 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 SIRPDQ9H106 197 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 FANCFQ9NPI8 374 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 CWC25Q9NXE8 425 aaPredicted RBP1.81□□□□□ -2.12
VPS50-216ENST00000484954 ZNF282Q9UDV7 671 aaPredicted RBP1.81□□□□□ -2.12
VPS50-216ENST00000484954 PSG11Q9UQ72 335 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 GRIN2DO15399 1336 aa1.81□□□□□ -2.12
VPS50-216ENST00000484954 SCN2AQ99250 2005 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 IGHV1OR15-1A0A075B7D0 117 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 IGHV7-81A0A0B4J1V7 117 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 PSMB11A5LHX3 300 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 LRCOL1A6NCL2 159 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 C19orf81C9J6K1 198 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 H0YL77 283 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 ADAM12O43184 909 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 MUTP22033 750 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 HTR1EP28566 365 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 UGT1A5P35504 534 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 NUDT1P36639 197 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 TIMM10P62072 90 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 MRPS11P82912 194 aaKnown RBP1.8□□□□□ -2.12
VPS50-216ENST00000484954 MRPS6P82932 125 aaKnown RBP1.8□□□□□ -2.12
VPS50-216ENST00000484954 SRYQ05066 204 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 UNC119Q13432 240 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 KARSQ15046 597 aaKnown RBP1.8□□□□□ -2.12
VPS50-216ENST00000484954 PTGES3Q15185 160 aaKnown RBP1.8□□□□□ -2.12
VPS50-216ENST00000484954 PARP6Q2NL67 630 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 SMU1Q2TAY7 513 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 METTL11BQ5VVY1 283 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 DLEU7Q6UYE1 221 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 ADAMTSL2Q86TH1 951 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 SERPINA9Q86WD7 417 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 CCDC170Q8IYT3 715 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 BPIFB2Q8N4F0 458 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 LRRC17Q8N6Y2 441 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 OR2T33Q8NG76 320 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 OR9A4Q8NGU2 314 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 ANKRD49Q8WVL7 239 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 MCHR2Q969V1 340 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 ZNF560Q96MR9 790 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 MBOAT4Q96T53 435 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 CAB39LQ9H9S4 337 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 MMP26Q9NRE1 261 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 GHRLQ9UBU3 117 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 UBQLN1Q9UMX0 589 aaKnown RBP1.8□□□□□ -2.12
VPS50-216ENST00000484954 TEX264Q9Y6I9 313 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 PLEKHG1Q9ULL1 1385 aa1.8□□□□□ -2.12
VPS50-216ENST00000484954 FAM166BA8MTA8 275 aa1.79□□□□□ -2.12
VPS50-216ENST00000484954 K7N7A8 449 aa1.79□□□□□ -2.12
VPS50-216ENST00000484954 HMOX1P09601 288 aa1.79□□□□□ -2.12
VPS50-216ENST00000484954 RPS2P15880 293 aaKnown RBP1.79□□□□□ -2.12
VPS50-216ENST00000484954 ZNF18P17022 549 aa1.79□□□□□ -2.12
VPS50-216ENST00000484954 RCC1P18754 421 aaPredicted RBP1.79□□□□□ -2.12
VPS50-216ENST00000484954 AQP1P29972 269 aa1.79□□□□□ -2.12
VPS50-216ENST00000484954 MAGEA4P43358 317 aa1.79□□□□□ -2.12
VPS50-216ENST00000484954 HNRNPFP52597 415 aaKnown RBP1.79□□□□□ -2.12
VPS50-216ENST00000484954 RPL8P62917 257 aaKnown RBP1.79□□□□□ -2.12
VPS50-216ENST00000484954 VLDLRP98155 873 aa1.79□□□□□ -2.12
VPS50-216ENST00000484954 TEFQ10587 303 aa1.79□□□□□ -2.12
VPS50-216ENST00000484954 NME3Q13232 169 aa1.79□□□□□ -2.12
VPS50-216ENST00000484954 EIF4EBP1Q13541 118 aaPredicted RBP1.79□□□□□ -2.12
VPS50-216ENST00000484954 ZFP2Q6ZN57 461 aa1.79□□□□□ -2.12
VPS50-216ENST00000484954 FAM220AQ7Z4H9 259 aa1.79□□□□□ -2.12
VPS50-216ENST00000484954 GOLGA7Q7Z5G4 137 aa1.79□□□□□ -2.12
VPS50-216ENST00000484954 NET1Q7Z628 596 aaPredicted RBP1.79□□□□□ -2.12
VPS50-216ENST00000484954 SKA3Q8IX90 412 aa1.79□□□□□ -2.12
VPS50-216ENST00000484954 H1FOOQ8IZA3 346 aaPredicted RBP1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms