RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 RAI1Q7Z5J4 1906 aaPredicted RBP20.29■□□□□ 0.84
USP4-208ENST00000464168 CCDC151A5D8V7 595 aa20.29■□□□□ 0.84
USP4-208ENST00000464168 UTS2O95399 124 aa20.29■□□□□ 0.84
USP4-208ENST00000464168 FCGR2AP12318 317 aa20.29■□□□□ 0.84
USP4-208ENST00000464168 RFX3P48380 749 aa20.29■□□□□ 0.84
USP4-208ENST00000464168 FOXA1P55317 472 aa20.29■□□□□ 0.84
USP4-208ENST00000464168 C17orf67Q0P5P2 114 aa20.29■□□□□ 0.84
USP4-208ENST00000464168 SGCBQ16585 318 aa20.29■□□□□ 0.84
USP4-208ENST00000464168 CPEB4Q17RY0 729 aaKnown RBP eCLIP20.29■□□□□ 0.84
USP4-208ENST00000464168 LGSNQ5TDP6 509 aa20.29■□□□□ 0.84
USP4-208ENST00000464168 LCA5Q86VQ0 697 aa20.29■□□□□ 0.84
USP4-208ENST00000464168 SLC22A9Q8IVM8 553 aa20.29■□□□□ 0.84
USP4-208ENST00000464168 LMF2Q9BU23 707 aaKnown RBP20.29■□□□□ 0.84
USP4-208ENST00000464168 MYNNQ9NPC7 610 aa20.29■□□□□ 0.84
USP4-208ENST00000464168 MIEF1Q9NQG6 463 aa20.29■□□□□ 0.84
USP4-208ENST00000464168 MRTO4Q9UKD2 239 aaKnown RBP20.29■□□□□ 0.84
USP4-208ENST00000464168 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.29■□□□□ 0.84
USP4-208ENST00000464168 HEATR5AQ86XA9 2040 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP20.28■□□□□ 0.84
USP4-208ENST00000464168 EXOC1LA0A1B0GW35 172 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 UBFD1O14562 309 aaKnown RBP20.28■□□□□ 0.84
USP4-208ENST00000464168 GMFGO60234 142 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 CNOT4O95628 575 aaKnown RBP20.28■□□□□ 0.84
USP4-208ENST00000464168 ANGPTL1O95841 491 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 IGKV1D-16P01601 117 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 GABRA3P34903 492 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 PRR5P85299 388 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 ZNHIT3Q15649 155 aaPredicted RBP20.28■□□□□ 0.84
USP4-208ENST00000464168 STAC2Q6ZMT1 411 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 SH2D5Q6ZV89 423 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 MMGT1Q8N4V1 131 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 NOA1Q8NC60 698 aaKnown RBP20.28■□□□□ 0.84
USP4-208ENST00000464168 TBL1XR1Q9BZK7 514 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 GSTO2Q9H4Y5 243 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 CLEC4AQ9UMR7 237 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 PRR14LQ5THK1 2151 aa20.28■□□□□ 0.84
USP4-208ENST00000464168 GXYLT2A0PJZ3 443 aa20.27■□□□□ 0.84
USP4-208ENST00000464168 INAFM1C9JVW0 142 aa20.27■□□□□ 0.84
USP4-208ENST00000464168 PAX1P15863 534 aa20.27■□□□□ 0.84
USP4-208ENST00000464168 PPP3CBP16298 524 aa20.27■□□□□ 0.84
USP4-208ENST00000464168 IL11P20809 199 aa20.27■□□□□ 0.84
USP4-208ENST00000464168 NTSP30990 170 aa20.27■□□□□ 0.84
USP4-208ENST00000464168 EIF1AXP47813 144 aaKnown RBP20.27■□□□□ 0.84
USP4-208ENST00000464168 PSMD4P55036 377 aaKnown RBP20.27■□□□□ 0.84
USP4-208ENST00000464168 GRAMD1BQ3KR37 738 aa20.27■□□□□ 0.84
USP4-208ENST00000464168 BEX5Q5H9J7 111 aa20.27■□□□□ 0.84
USP4-208ENST00000464168 OR6K3Q8NGY3 331 aa20.27■□□□□ 0.84
USP4-208ENST00000464168 MID1IP1Q9NPA3 183 aa20.27■□□□□ 0.84
USP4-208ENST00000464168 WBP11Q9Y2W2 641 aaKnown RBP20.27■□□□□ 0.84
USP4-208ENST00000464168 EMC9Q9Y3B6 208 aa20.27■□□□□ 0.84
USP4-208ENST00000464168 EIF1AYO14602 144 aaKnown RBP20.26■□□□□ 0.83
USP4-208ENST00000464168 PLAUP00749 431 aa20.26■□□□□ 0.83
USP4-208ENST00000464168 ZNF704Q6ZNC4 412 aaPredicted RBP20.26■□□□□ 0.83
USP4-208ENST00000464168 FAM76AQ8TAV0 307 aa20.26■□□□□ 0.83
USP4-208ENST00000464168 GMPPAQ96IJ6 420 aaPredicted RBP20.26■□□□□ 0.83
USP4-208ENST00000464168 ADGRG7Q96K78 797 aa20.26■□□□□ 0.83
USP4-208ENST00000464168 PRRG4Q9BZD6 226 aa20.26■□□□□ 0.83
USP4-208ENST00000464168 ZNF701Q9NV72 531 aaPredicted RBP20.26■□□□□ 0.83
USP4-208ENST00000464168 STOML1Q9UBI4 398 aa20.26■□□□□ 0.83
USP4-208ENST00000464168 VDAC3Q9Y277 283 aa20.26■□□□□ 0.83
USP4-208ENST00000464168 POLR3HQ9Y535 204 aaPredicted RBP20.26■□□□□ 0.83
USP4-208ENST00000464168 GOLGA8RI6L899 631 aa20.25■□□□□ 0.83
USP4-208ENST00000464168 SS18L1O75177 396 aaPredicted RBP20.25■□□□□ 0.83
USP4-208ENST00000464168 MAP3K8P41279 467 aa20.25■□□□□ 0.83
USP4-208ENST00000464168 WHAMMP3Q1A5X7 153 aa20.25■□□□□ 0.83
USP4-208ENST00000464168 CTU2Q2VPK5 515 aaKnown RBP20.25■□□□□ 0.83
USP4-208ENST00000464168 PPP4R4Q6NUP7 873 aa20.25■□□□□ 0.83
USP4-208ENST00000464168 ZNF551Q7Z340 670 aaPredicted RBP20.25■□□□□ 0.83
USP4-208ENST00000464168 TRIM46Q7Z4K8 759 aa20.25■□□□□ 0.83
USP4-208ENST00000464168 EXOC3L1Q86VI1 746 aa20.25■□□□□ 0.83
USP4-208ENST00000464168 CCNYL1Q8N7R7 359 aa20.25■□□□□ 0.83
USP4-208ENST00000464168 OR10D3Q8NH80 312 aa20.25■□□□□ 0.83
USP4-208ENST00000464168 PIK3R3Q92569 461 aa20.25■□□□□ 0.83
USP4-208ENST00000464168 HOXB13Q92826 284 aaPredicted RBP20.25■□□□□ 0.83
USP4-208ENST00000464168 NPAS1Q99742 590 aa20.25■□□□□ 0.83
USP4-208ENST00000464168 C3orf14Q9HBI5 128 aa20.25■□□□□ 0.83
USP4-208ENST00000464168 TTC36A6NLP5 189 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 URI1O94763 535 aaPredicted RBP20.24■□□□□ 0.83
USP4-208ENST00000464168 KCNH1O95259 989 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 PLGP00747 810 aaPredicted RBP20.24■□□□□ 0.83
USP4-208ENST00000464168 OPN1LWP04000 364 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 ABHD2P08910 425 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 IFI6P09912 130 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 ZNF17P17021 662 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 CTBP2P56545 445 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 PPP2R2BQ00005 443 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 IMPG1Q17R60 797 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 NOXRED1Q6NXP6 359 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 WDR75Q8IWA0 830 aaKnown RBP20.24■□□□□ 0.83
USP4-208ENST00000464168 GTPBP8Q8N3Z3 284 aaPredicted RBP20.24■□□□□ 0.83
USP4-208ENST00000464168 OR4C3Q8NH37 302 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 TMEM171Q8WVE6 324 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 EGLN2Q96KS0 407 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 TMEM204Q9BSN7 226 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 EQTNQ9NQ60 294 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 MXRA5Q9NR99 2828 aa20.24■□□□□ 0.83
USP4-208ENST00000464168 A0A087WZY1 265 aa20.23■□□□□ 0.83
USP4-208ENST00000464168 ALG1L2C9J202 215 aa20.23■□□□□ 0.83
USP4-208ENST00000464168 ADAMDEC1O15204 470 aa20.23■□□□□ 0.83
USP4-208ENST00000464168 PSMA4P25789 261 aaKnown RBP20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms