RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 BAIAP2L1Q9UHR4 511 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 SLC22A20A6NK97 555 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 EMC8O43402 210 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 NKX2-2O95096 273 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 ANGPTL1O95841 491 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 CPOXP36551 454 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 PRIM2P49643 509 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 ART1P52961 327 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 EEF1A1P68104 462 aaKnown RBP12.61□□□□□ -0.39
USP4-206ENST00000461553 C17orf67Q0P5P2 114 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 XKR7Q5GH72 579 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 EEF1A1P5Q5VTE0 462 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 OR2A2Q6IF42 318 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 MFSD12Q6NUT3 480 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 MARCH3Q86UD3 253 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 COX18Q8N8Q8 333 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 PPP1R14CQ8TAE6 165 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 SMPDL3BQ92485 455 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 HOXB13Q92826 284 aaPredicted RBP12.61□□□□□ -0.39
USP4-206ENST00000461553 GIMAP5Q96F15 307 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 C1orf50Q9BV19 199 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 GALNT8Q9NY28 637 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 GIMAP2Q9UG22 337 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 PACSIN3Q9UKS6 424 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 EDARQ9UNE0 448 aa12.61□□□□□ -0.39
USP4-206ENST00000461553 MTORP42345 2549 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 IGLV3-32A0A0A0MS00 114 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 OR2M5A3KFT3 312 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 GMFGO60234 142 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 PEX11AO75192 247 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 GOSR1O95249 250 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 SLU7O95391 586 aaKnown RBP12.6□□□□□ -0.39
USP4-206ENST00000461553 IGKV1D-16P01601 117 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 ALOX5P09917 674 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 ACP2P11117 423 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 HPGDP15428 266 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 EFNA1P20827 205 aaPredicted RBP12.6□□□□□ -0.39
USP4-206ENST00000461553 RPS3AP61247 264 aaKnown RBP12.6□□□□□ -0.39
USP4-206ENST00000461553 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.6□□□□□ -0.39
USP4-206ENST00000461553 UGT3A2Q3SY77 523 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 WDR93Q6P2C0 686 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 ZCCHC12Q6PEW1 402 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 GALNT10Q86SR1 603 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 CNEP1R1Q8N9A8 125 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 FNDC5Q8NAU1 212 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 OR5M1Q8NGP8 315 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 OR6Y1Q8NGX8 325 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 DUSP19Q8WTR2 217 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 FAM120BQ96EK7 910 aaKnown RBP12.6□□□□□ -0.39
USP4-206ENST00000461553 CHMP6Q96FZ7 201 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 YIPF4Q9BSR8 244 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 PINK1Q9BXM7 581 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 RTN4RQ9BZR6 473 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 NEUROD4Q9HD90 331 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 ZCCHC3Q9NUD5 404 aaKnown RBP12.6□□□□□ -0.39
USP4-206ENST00000461553 ATAD3AQ9NVI7 634 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 NTMQ9P121 344 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.6□□□□□ -0.39
USP4-206ENST00000461553 ATP6V1HQ9UI12 483 aa12.6□□□□□ -0.39
USP4-206ENST00000461553 V9GYY5 206 aaPredicted RBP12.6□□□□□ -0.39
USP4-206ENST00000461553 A0A1W2PNV4 684 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 ALG1L2C9J202 215 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 NDUFB5O43674 189 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 LYPLA1O75608 230 aaPredicted RBP12.59□□□□□ -0.39
USP4-206ENST00000461553 OXSR1O95747 527 aaPredicted RBP12.59□□□□□ -0.39
USP4-206ENST00000461553 HSPA4LO95757 839 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 TGM6O95932 706 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 CRHP06850 196 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 BPGMP07738 259 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 NGFRP08138 427 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 EPXP11678 715 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 FCGR2AP12318 317 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 ZNF17P17021 662 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 LCN1P31025 176 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 MAP3K8P41279 467 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 SERPINB4P48594 390 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 PTGR1Q14914 329 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 MLC1Q15049 377 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 DUSP5Q16690 384 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 KRT71Q3SY84 523 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 GLYR1Q49A26 553 aaPredicted RBP12.59□□□□□ -0.39
USP4-206ENST00000461553 FIGNL1Q6PIW4 674 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 EXOC3L1Q86VI1 746 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 CDC20BQ86Y33 519 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 GATSQ8NAP1 163 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 SLC16A11Q8NCK7 471 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 OR7A2PQ8NGA2 310 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 LINC01560Q8TB33 94 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 TUBGCP3Q96CW5 907 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 OTUB1Q96FW1 271 aaPredicted RBP12.59□□□□□ -0.39
USP4-206ENST00000461553 STOML1Q9UBI4 398 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 ST6GALNAC2Q9UJ37 374 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 VDAC3Q9Y277 283 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 ZNF175Q9Y473 711 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 SNX8Q9Y5X2 465 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 HEATR5AQ86XA9 2040 aa12.59□□□□□ -0.39
USP4-206ENST00000461553 ZNF469Q96JG9 3925 aaPredicted RBP12.58□□□□□ -0.39
USP4-206ENST00000461553 MAP1AP78559 2803 aaPredicted RBP12.58□□□□□ -0.4
USP4-206ENST00000461553 UQCRHLA0A096LP55 91 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms