RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 TMEM216Q9P0N5 145 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 DCDC2Q9UHG0 476 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 TIMM22Q9Y584 194 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 EIF1AYO14602 144 aaKnown RBP11.94□□□□□ -0.5
HMGB3-204ENST00000448905 SIAH2O43255 324 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 NDUFB5O43674 189 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 UTS2O95399 124 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 CNOT4O95628 575 aaKnown RBP11.94□□□□□ -0.5
HMGB3-204ENST00000448905 GSTA1P08263 222 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 PABPC4LP0CB38 370 aaKnown RBP11.94□□□□□ -0.5
HMGB3-204ENST00000448905 PRPS2P11908 318 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 ME2P23368 584 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 PTH2RP49190 550 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 PRR5P85299 388 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 WHAMMP3Q1A5X7 153 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 CPTPQ5TA50 214 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 IKBIPQ70UQ0 350 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 EXOC3L1Q86VI1 746 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 CCNYL1Q8N7R7 359 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 GPR151Q8TDV0 419 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 ACMSDQ8TDX5 336 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 L3HYPDHQ96EM0 354 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 C11orf24Q96F05 449 aaPredicted RBP11.94□□□□□ -0.5
HMGB3-204ENST00000448905 REXO5Q96IC2 774 aaKnown RBP11.94□□□□□ -0.5
HMGB3-204ENST00000448905 AMDHD1Q96NU7 426 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 TMEM237Q96Q45 408 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 GLIPR2Q9H4G4 154 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 MID1IP1Q9NPA3 183 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 TIGARQ9NQ88 270 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 GPR52Q9Y2T5 361 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 SNX8Q9Y5X2 465 aa11.94□□□□□ -0.5
HMGB3-204ENST00000448905 IGLV3-32A0A0A0MS00 114 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 TRIM64A6NGJ6 449 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 TRIM64BA6NI03 449 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 AQP8O94778 261 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 FESP07332 822 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 IFI6P09912 130 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 ZNF17P17021 662 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 GPC1P35052 558 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 ZNF41P51814 821 aaPredicted RBP11.93□□□□□ -0.5
HMGB3-204ENST00000448905 RAC1P63000 192 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 CFAP157Q5JU67 520 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 FAM71E1Q6IPT2 247 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 ZNF704Q6ZNC4 412 aaPredicted RBP11.93□□□□□ -0.5
HMGB3-204ENST00000448905 TRIM46Q7Z4K8 759 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 HOMEZQ8IX15 550 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 ZBTB8AQ96BR9 441 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 METTL2AQ96IZ6 378 aaKnown RBP11.93□□□□□ -0.5
HMGB3-204ENST00000448905 HS3ST6Q96QI5 342 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 LMF2Q9BU23 707 aaKnown RBP11.93□□□□□ -0.5
HMGB3-204ENST00000448905 OR10A4Q9H209 315 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 MYNNQ9NPC7 610 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 NGBQ9NPG2 151 aa11.93□□□□□ -0.5
HMGB3-204ENST00000448905 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.92□□□□□ -0.5
HMGB3-204ENST00000448905 C17orf51A8MQB3 221 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 B4DXG7 233 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 KLF4O43474 513 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 GMFGO60234 142 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 SEC22BO75396 215 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 CTAGE8P0CG41 777 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 PAX1P15863 534 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 DDX5P17844 614 aaKnown RBP11.92□□□□□ -0.5
HMGB3-204ENST00000448905 LCN1P31025 176 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 HTR6P50406 440 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 PRKAG1P54619 331 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 CARD18P57730 90 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 GUSBP1Q15486 140 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 UBAP2Q5T6F2 1119 aaKnown RBP11.92□□□□□ -0.5
HMGB3-204ENST00000448905 NOXRED1Q6NXP6 359 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 STAC2Q6ZMT1 411 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 TRMT10CQ7L0Y3 403 aaKnown RBP11.92□□□□□ -0.5
HMGB3-204ENST00000448905 CTAGE4Q8IX94 777 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 ZNF611Q8N823 705 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 CDRT4Q8N9R6 151 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 STEAP2Q8NFT2 490 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 ZFP28Q8NHY6 868 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.92□□□□□ -0.5
HMGB3-204ENST00000448905 ACTRT2Q8TDY3 377 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 TRMT61AQ96FX7 289 aaKnown RBP11.92□□□□□ -0.5
HMGB3-204ENST00000448905 MARK4Q96L34 752 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 USB1Q9BQ65 265 aaKnown RBP11.92□□□□□ -0.5
HMGB3-204ENST00000448905 TACO1Q9BSH4 297 aaKnown RBP11.92□□□□□ -0.5
HMGB3-204ENST00000448905 ZNF701Q9NV72 531 aaPredicted RBP11.92□□□□□ -0.5
HMGB3-204ENST00000448905 VDAC3Q9Y277 283 aa11.92□□□□□ -0.5
HMGB3-204ENST00000448905 ALG1L2C9J202 215 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 INAFM1C9JVW0 142 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 SCDO00767 359 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 ADAMDEC1O15204 470 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 SS18L1O75177 396 aaPredicted RBP11.91□□□□□ -0.5
HMGB3-204ENST00000448905 RSL1D1O76021 490 aaKnown RBP11.91□□□□□ -0.5
HMGB3-204ENST00000448905 PSMG1O95456 288 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 HSPA4LO95757 839 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 ABHD2P08910 425 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 MYL2P10916 166 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 CCKARP32238 428 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 EIF1P41567 113 aaKnown RBP11.91□□□□□ -0.5
HMGB3-204ENST00000448905 SERPINB4P48594 390 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 MANFP55145 182 aaKnown RBP11.91□□□□□ -0.5
HMGB3-204ENST00000448905 ATP5J2P56134 94 aa11.91□□□□□ -0.5
HMGB3-204ENST00000448905 SLC29A2Q14542 456 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms