RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PRR5P85299 388 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 SNTB1Q13884 538 aaKnown RBP6.39□□□□□ -1.39
VPS41-208ENST00000448833 UBAP2Q5T6F2 1119 aaKnown RBP6.39□□□□□ -1.39
VPS41-208ENST00000448833 LIPMQ5VYY2 423 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 TMEM107Q6UX40 140 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 NPSR1Q6W5P4 371 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 STK32CQ86UX6 486 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 EXOC3L1Q86VI1 746 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 WDR75Q8IWA0 830 aaKnown RBP6.39□□□□□ -1.39
VPS41-208ENST00000448833 UBQLNLQ8IYU4 475 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 GCNT2Q8N0V5 402 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 LRRC75A-AS1Q8N1F1 130 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 CNEP1R1Q8N9A8 125 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 OR6Y1Q8NGX8 325 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 GPR151Q8TDV0 419 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 ACTRT2Q8TDY3 377 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 ARL8AQ96BM9 186 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 ZBTB8AQ96BR9 441 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 PPCDCQ96CD2 204 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 C1GALT1C1Q96EU7 318 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 ZNF845Q96IR2 970 aaPredicted RBP6.39□□□□□ -1.39
VPS41-208ENST00000448833 FAM111AQ96PZ2 611 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 PRPF18Q99633 342 aaKnown RBP6.39□□□□□ -1.39
VPS41-208ENST00000448833 CCT7Q99832 543 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 LMF2Q9BU23 707 aaKnown RBP6.39□□□□□ -1.39
VPS41-208ENST00000448833 MED18Q9BUE0 208 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 EBPLQ9BY08 206 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 HOXD1Q9GZZ0 328 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 LIME1Q9H400 295 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 GLIPR2Q9H4G4 154 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 REEP4Q9H6H4 257 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 RNF122Q9H9V4 155 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 TIGARQ9NQ88 270 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 UBQLN4Q9NRR5 601 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 ACSS1Q9NUB1 689 aaPredicted RBP6.39□□□□□ -1.39
VPS41-208ENST00000448833 RPH3AQ9Y2J0 694 aaPredicted RBP6.39□□□□□ -1.39
VPS41-208ENST00000448833 EMC9Q9Y3B6 208 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 ZNF337Q9Y3M9 751 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 ZFHX3Q15911 3703 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 NF1P21359 2839 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 NUP214P35658 2090 aaPredicted RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 A0A1W2PPM1 405 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 OR2M5A3KFT3 312 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 C7orf72A4D263 438 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 ALG1L2C9J202 215 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 H3BML4 177 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 H3BNH8 94 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 SCDO00767 359 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 UBFD1O14562 309 aaKnown RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 AZIN1O14977 448 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 PDPK1O15530 556 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 CTIFO43310 598 aaKnown RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 PLIN3O60664 434 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 TRIM13O60858 407 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 TMCC2O75069 709 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 UTS2O95399 124 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 SYNGR4O95473 234 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 ANGPTL1O95841 491 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 TGM6O95932 706 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 PLGP00747 810 aaPredicted RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 PROCP04070 461 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 HRGP04196 525 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 FGF4P08620 206 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 KRT16P08779 473 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 ALOX5P09917 674 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 POU2F1P14859 743 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 KRT4P19013 534 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 IL11P20809 199 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 TBXA2RP21731 343 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 HOXC12P31275 282 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 UGT2B10P36537 528 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 CPOXP36551 454 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 SERPINB5P36952 375 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 PRIM2P49643 509 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 HTR6P50406 440 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 ZNF41P51814 821 aaPredicted RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 CTBP2P56545 445 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 B3GALT5-AS1P59052 145 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 NKX6-1P78426 367 aaPredicted RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 FOXD4Q12950 439 aaPredicted RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 MLC1Q15049 377 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 KIAA0040Q15053 153 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 CPTPQ5TA50 214 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 PRSS57Q6UWY2 283 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 C20orf204Q6ZNR8 217 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 FAM214BQ7L5A3 538 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 MTERF4Q7Z6M4 381 aaKnown RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 P3H2Q8IVL5 708 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 METTL25Q8N6Q8 603 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 ZNF527Q8NB42 609 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 NUP43Q8NFH3 380 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 OR4N2Q8NGD1 307 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 MZB1Q8WU39 189 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 UBLCP1Q8WVY7 318 aaPredicted RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 HOXB13Q92826 284 aaPredicted RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 STARD4Q96DR4 205 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 TRIM44Q96DX7 344 aaPredicted RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 REXO5Q96IC2 774 aaKnown RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 C18orf12Q96KH6 178 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 MS4A4EQ96PG1 132 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms