RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 OR9A2Q8NGT5 310 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 SPRYD4Q8WW59 207 aaPredicted RBP10.56□□□□□ -0.72
USP4-205ENST00000431357 ZFYVE19Q96K21 471 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 ZNF649Q9BS31 505 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 TTYH2Q9BSA4 534 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 TMED9Q9BVK6 235 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 PRR14Q9BWN1 585 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 GON7Q9BXV9 100 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 HDHD5Q9BXW7 423 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 KCNN2Q9H2S1 579 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 C11orf49Q9H6J7 331 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 TBC1D17Q9HA65 648 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 MBNL1Q9NR56 388 aaKnown RBP10.56□□□□□ -0.72
USP4-205ENST00000431357 NTMQ9P121 344 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 CBLCQ9ULV8 474 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 CHST2Q9Y4C5 530 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 TBC1D3KA0A087X1G2 549 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 FAM240BA0A1B0GVZ2 78 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 TBC1D3FA6NER0 549 aaPredicted RBP10.55□□□□□ -0.72
USP4-205ENST00000431357 OTOL1A6NHN0 477 aaPredicted RBP10.55□□□□□ -0.72
USP4-205ENST00000431357 LYRM1O43325 122 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 FRS3O43559 492 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 SLC43A1O75387 559 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 ALAS2P22557 587 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 CERS1P27544 350 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 SSTR4P31391 388 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 SOX18P35713 384 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 CD79BP40259 229 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 MTNR1BP49286 362 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 CAV3P56539 151 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 CLDN20P56880 219 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 RAB25P57735 213 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 IRF4Q15306 451 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 EIPR1Q53HC9 387 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 YIF1BQ5BJH7 314 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 AGBL4Q5VU57 503 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 TBC1D3GQ6DHY5 549 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 CDC73Q6P1J9 531 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 FAM122CQ6P4D5 195 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 MTSS1LQ765P7 747 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 NRMQ8IXM6 262 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 LINC00469Q8N7U9 141 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 GANCQ8TET4 914 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 GIMAP5Q96F15 307 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 SECISBP2Q96T21 854 aaKnown RBP10.55□□□□□ -0.72
USP4-205ENST00000431357 KCNJ15Q99712 375 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 TRMT61BQ9BVS5 477 aaKnown RBP10.55□□□□□ -0.72
USP4-205ENST00000431357 FN3KQ9H479 309 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 NIPAL2Q9H841 368 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 EQTNQ9NQ60 294 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 ZNF443Q9Y2A4 671 aaPredicted RBP10.55□□□□□ -0.72
USP4-205ENST00000431357 RWDD3Q9Y3V2 267 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 OR1A2Q9Y585 309 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 A0A0B4J293 547 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 SMIM30A4D0T7 59 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 ANTXRLA6NF34 631 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 ORC5O43913 435 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 RGS9O75916 674 aaPredicted RBP10.55□□□□□ -0.72
USP4-205ENST00000431357 CH25HO95992 272 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 CD53P19397 219 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 PAICSP22234 425 aaKnown RBP10.55□□□□□ -0.72
USP4-205ENST00000431357 PTGER1P34995 402 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 HOXC5Q00444 222 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 ADAM15Q13444 863 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 LRRC32Q14392 662 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 TATDN3Q17R31 274 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 UAP1L1Q3KQV9 507 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 FAM78AQ5JUQ0 283 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 CXXC5Q7LFL8 322 aaKnown RBP10.55□□□□□ -0.72
USP4-205ENST00000431357 ADGRD2Q7Z7M1 963 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 PLCZ1Q86YW0 608 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 CCDC28AQ8IWP9 274 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 TRIM48Q8IWZ4 208 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 TMEM145Q8NBT3 493 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 BRIX1Q8TDN6 353 aaKnown RBP10.55□□□□□ -0.72
USP4-205ENST00000431357 SMARCD2Q92925 531 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 ZG16BQ96DA0 208 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 RNF31Q96EP0 1072 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 SLC35A4Q96G79 324 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 MS4A4EQ96PG1 132 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 FYTTD1Q96QD9 318 aaKnown RBP10.55□□□□□ -0.72
USP4-205ENST00000431357 UBL7Q96S82 380 aaPredicted RBP10.55□□□□□ -0.72
USP4-205ENST00000431357 MACROD1Q9BQ69 325 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 APOBEC3BQ9UH17 382 aaKnown RBP10.55□□□□□ -0.72
USP4-205ENST00000431357 HEBP2Q9Y5Z4 205 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 MAU2Q9Y6X3 613 aa10.55□□□□□ -0.72
USP4-205ENST00000431357 TEX51A0A1B0GUA7 166 aa10.54□□□□□ -0.72
USP4-205ENST00000431357 PRR19A6NJB7 356 aa10.54□□□□□ -0.72
USP4-205ENST00000431357 J3QRE1 110 aa10.54□□□□□ -0.72
USP4-205ENST00000431357 LRRTM2O43300 516 aa10.54□□□□□ -0.72
USP4-205ENST00000431357 ARHGEF9O43307 516 aa10.54□□□□□ -0.72
USP4-205ENST00000431357 ADH1BP00325 375 aa10.54□□□□□ -0.72
USP4-205ENST00000431357 STATHP02808 62 aa10.54□□□□□ -0.72
USP4-205ENST00000431357 FAM157BP0CG42 384 aa10.54□□□□□ -0.72
USP4-205ENST00000431357 PSKH1P11801 424 aa10.54□□□□□ -0.72
USP4-205ENST00000431357 HOXB1P14653 301 aaPredicted RBP10.54□□□□□ -0.72
USP4-205ENST00000431357 GPR4P46093 362 aa10.54□□□□□ -0.72
USP4-205ENST00000431357 PDX1P52945 283 aa10.54□□□□□ -0.72
USP4-205ENST00000431357 RAB8AP61006 207 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms