RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ARHGAP15Q53QZ3 475 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 TYW3Q6IPR3 259 aaKnown RBP9.2□□□□□ -0.94
SS18-203ENST00000415083 THSD4Q6ZMP0 1018 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 VN1R4Q7Z5H5 301 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 TRIM69Q86WT6 500 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 NATD1Q8N6N6 113 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 NUP43Q8NFH3 380 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 PFN4Q8NHR9 129 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 SAMD8Q96LT4 415 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 C12orf66Q96MD2 445 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 FERD3LQ96RJ6 166 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 HDAC8Q9BY41 377 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 FBXL4Q9UKA2 621 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 EXOSC1Q9Y3B2 195 aaKnown RBP9.2□□□□□ -0.94
SS18-203ENST00000415083 SLC30A4O14863 429 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 SH3BP5O60239 455 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 FKTNO75072 461 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 ADAM11O75078 769 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 RFPL3O75679 317 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 ALX3O95076 343 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 CCNYL3P0C7X3 344 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 CLUP10909 449 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 SLC2A2P11168 524 aaPredicted RBP9.19□□□□□ -0.94
SS18-203ENST00000415083 PSKH1P11801 424 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 E2F1Q01094 437 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 TNK1Q13470 666 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 CLPPQ16740 277 aaPredicted RBP9.19□□□□□ -0.94
SS18-203ENST00000415083 PDZK1Q5T2W1 519 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 ZNF836Q6ZNA1 936 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 CPOQ8IVL8 374 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 SIX5Q8N196 739 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 OR52E1Q8NGJ3 308 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 ZFAND1Q8TCF1 268 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 SFXN5Q8TD22 340 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 PTP4A1Q93096 173 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 JAM3Q9BX67 310 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 IRF2BPLQ9H1B7 796 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 ATP13A2Q9NQ11 1180 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 RPRD1BQ9NQG5 326 aaKnown RBP9.19□□□□□ -0.94
SS18-203ENST00000415083 SLC9A8Q9Y2E8 581 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 OR6C70A6NIJ9 312 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 ISM1B1AKI9 464 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 BHLHE40O14503 412 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 CASKO14936 926 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 MID1O15344 667 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 LYRM1O43325 122 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 CEACAM5P06731 702 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 NR2F6P10588 404 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 IFI30P13284 250 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 MYL12AP19105 171 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 FPR3P25089 353 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 HTR1FP30939 366 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 GZMKP49863 264 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 ST8SIA6P61647 398 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 CCNJQ5T5M9 372 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 SSX6Q7RTT6 188 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 C17orf47Q8NEP4 570 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 OR2L3Q8NG85 312 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 OR7G1Q8NGA0 311 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 FLVCR1-AS1Q8TAF5 88 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 TEX47Q8TBZ9 253 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 WFIKKN2Q8TEU8 576 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 CDS1Q92903 461 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 ENTPD4Q9Y227 616 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.19□□□□□ -0.94
SS18-203ENST00000415083 SYT5O00445 386 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 RNGTTO60942 597 aaKnown RBP9.19□□□□□ -0.94
SS18-203ENST00000415083 FCARP24071 287 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 SHC1P29353 583 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 RAB25P57735 213 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 PPP3R1P63098 170 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 EEF1A1P68104 462 aaKnown RBP9.19□□□□□ -0.94
SS18-203ENST00000415083 DECR1Q16698 335 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 PLA1AQ53H76 456 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 EXOSC6Q5RKV6 272 aaKnown RBP9.19□□□□□ -0.94
SS18-203ENST00000415083 SYCE2Q6PIF2 218 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 ADCK2Q7Z695 626 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 NEIL3Q8TAT5 605 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 CXorf40AQ8TE69 158 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 GANCQ8TET4 914 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 CLIP3Q96DZ5 547 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 BBS4Q96RK4 519 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 SECISBP2Q96T21 854 aaKnown RBP9.19□□□□□ -0.94
SS18-203ENST00000415083 BTBD1Q9H0C5 482 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 UBQLN3Q9H347 655 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 SLC7A7Q9UM01 511 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 CLCA2Q9UQC9 943 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 PCDHGB7Q9Y5F8 929 aa9.19□□□□□ -0.94
SS18-203ENST00000415083 MEN1O00255 615 aa9.18□□□□□ -0.94
SS18-203ENST00000415083 RNF13O43567 381 aa9.18□□□□□ -0.94
SS18-203ENST00000415083 FGBP02675 491 aa9.18□□□□□ -0.94
SS18-203ENST00000415083 GSTM3P21266 225 aa9.18□□□□□ -0.94
SS18-203ENST00000415083 NOS3P29474 1203 aa9.18□□□□□ -0.94
SS18-203ENST00000415083 WASP42768 502 aa9.18□□□□□ -0.94
SS18-203ENST00000415083 GPR176Q14439 515 aa9.18□□□□□ -0.94
SS18-203ENST00000415083 TRAM2Q15035 370 aa9.18□□□□□ -0.94
SS18-203ENST00000415083 SLC36A2Q495M3 483 aa9.18□□□□□ -0.94
SS18-203ENST00000415083 ZNF425Q6IV72 752 aa9.18□□□□□ -0.94
SS18-203ENST00000415083 BHLHB9Q6PI77 547 aa9.18□□□□□ -0.94
SS18-203ENST00000415083 RFPL4BQ6ZWI9 263 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms