RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 CMAHPQ9Y471 501 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 PCDHGB7Q9Y5F8 929 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 SPTY2D1-AS1A0A0U1RR47 76 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 GLOD5A6NK44 160 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 GNB3P16520 340 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 PEX2P28328 305 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 EVI2BP34910 448 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 SFTPDP35247 375 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 EEF1A1P68104 462 aaKnown RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 NKX3-2P78367 333 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 CLCQ05315 142 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 MRPL58Q14197 206 aaKnown RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 ESCO2Q56NI9 601 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 DRICH1Q6PGQ1 229 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 FAM109AQ8N4B1 249 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 PAPD5Q8NDF8 572 aaKnown RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 C1orf216Q8TAB5 229 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 DEDD2Q8WXF8 326 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 MED30Q96HR3 178 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 GPR87Q9BY21 358 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 PELI2Q9HAT8 420 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 ADAM18Q9Y3Q7 739 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 BAZ2AQ9UIF9 1905 aaKnown RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 A0A1B0GUH1 482 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 SH3PXD2BA1X283 911 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 DNAJA2O60884 412 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 GSTM2P28161 218 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 DNAJA1P31689 397 aaKnown RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 TGFBIQ15582 683 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 OR4C11Q6IEV9 310 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 NDUFAF7Q7L592 441 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 VTCN1Q7Z7D3 282 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 LGI4Q8N135 537 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF808Q8N4W9 903 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 OR11L1Q8NGX0 322 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF420Q8TAQ5 688 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 ACTR6Q9GZN1 396 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 ARL8BQ9NVJ2 186 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 KCNS2Q9ULS6 477 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 NPIPA5A0A0B4J1W7 369 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 PCDH17O14917 1159 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 RNF13O43567 381 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 NUDT21O43809 227 aaKnown RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF888P0CJ79 500 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 HMGCLP35914 325 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 TAP2Q03519 686 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 FRG2Q64ET8 278 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 PAQR3Q6TCH7 311 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 IDO2Q6ZQW0 420 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 OR2T12Q8NG77 320 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 FRZBQ92765 325 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 EXTL1Q92935 676 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 FRG2BQ96QU4 278 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 TSPAN10Q9H1Z9 355 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 TFB2MQ9H5Q4 396 aaKnown RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 PARPBPQ9NWS1 579 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 PCDHGA1Q9Y5H4 931 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 A0A0U1RQJ8 604 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 TP73O15350 636 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 PROM1O43490 865 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 CSTAP01040 98 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 FABP3P05413 133 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 CDK10Q15131 360 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 SMYD5Q6GMV2 418 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 SSX7Q7RTT5 188 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 KANSL1Q7Z3B3 1105 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 TMPRSS9Q7Z410 1059 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 FTMTQ8N4E7 242 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 C11orf65Q8NCR3 313 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 MITD1Q8WV92 249 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 IMP4Q96G21 291 aaKnown RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF486Q96H40 463 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 NPAS2Q99743 824 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 ITPAQ9BY32 194 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 LHPPQ9H008 270 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 MEAF6Q9HAF1 191 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 CNOT6Q9ULM6 557 aaKnown RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 SDK1Q7Z5N4 2213 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 ANKUB1A6NFN9 424 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 RIIAD1A6NNX1 92 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 EDF1O60869 148 aaKnown RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 CSF2P04141 144 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 ABHD2P08910 425 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 UROSP10746 265 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 PRDX6P30041 224 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 LEPRP48357 1165 aaKnown RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 HNRNPFP52597 415 aaKnown RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 HERVK_113P63132 956 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 MC2RQ01718 297 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 KCTD19Q17RG1 926 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 LIPMQ5VYY2 423 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 NXPE4Q6UWF7 544 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 KLHDC8AQ8IYD2 350 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 OR5B2Q96R09 309 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 SULT4A1Q9BR01 284 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 DENND2DQ9H6A0 471 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-202ENST00000409435 MYNNQ9NPC7 610 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF446Q9NWS9 450 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 EGFL7Q9UHF1 273 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 IFT52Q9Y366 437 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms