RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CCDC7Q96M83 1385 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 C1orf232A0A0U1RR37 186 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 TRAFD1O14545 582 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-204ENST00000399489 MID1O15344 667 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 MLNRO43193 412 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 LDB2O43679 373 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 NDUFS6O75380 124 aaKnown RBP3.66□□□□□ -1.82
HMGB1-204ENST00000399489 GAPDHP04406 335 aaKnown RBP3.66□□□□□ -1.82
HMGB1-204ENST00000399489 ALOX5P09917 674 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 GSTT2P0CG29 244 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 GSTT2BP0CG30 244 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 CHRNB2P17787 502 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 TBXA2RP21731 343 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 GPX3P22352 226 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 IL32P24001 234 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 OXTRP30559 389 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 STX2P32856 288 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 CDH5P33151 784 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-204ENST00000399489 NAA10P41227 235 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-204ENST00000399489 CRATP43155 626 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 CBX5P45973 191 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 ARRB1P49407 418 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-204ENST00000399489 IST1P53990 364 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 STX17P56962 302 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 ISL1P61371 349 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 SKP1P63208 163 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 PITX1P78337 314 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-204ENST00000399489 MFGE8Q08431 387 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-204ENST00000399489 CDH17Q12864 832 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 CRMP1Q14194 572 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 MOGAT2Q3SYC2 334 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 PAPPA-AS1Q5QFB9 102 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 VITQ6UXI7 678 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 DPY19L2P2Q6ZN68 376 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 KCNMB4Q86W47 210 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 MAP7D3Q8IWC1 876 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 POC1AQ8NBT0 407 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 CCDC197Q8NCU1 140 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 SDR9C7Q8NEX9 313 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 STXBP6Q8NFX7 210 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 OR7G2Q8NG99 324 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 OR5T3Q8NGG3 340 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF461Q8TAF7 563 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 ENKURQ8TC29 256 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 ADIPOR1Q96A54 375 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 PHF21AQ96BD5 680 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 SNF8Q96H20 258 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 SLC38A2Q96QD8 506 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 RBM4BQ9BQ04 359 aaKnown RBP3.66□□□□□ -1.82
HMGB1-204ENST00000399489 WDR77Q9BQA1 342 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-204ENST00000399489 TMEM246Q9BRR3 403 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 RBM4Q9BWF3 364 aaKnown RBP3.66□□□□□ -1.82
HMGB1-204ENST00000399489 HINT2Q9BX68 163 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 DCLK3Q9C098 648 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 HDHD2Q9H0R4 259 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 NTN4Q9HB63 628 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 POLE4Q9NR33 117 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 PXMP2Q9NR77 195 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 POLDIP2Q9Y2S7 368 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 SRPRBQ9Y5M8 271 aaKnown RBP3.66□□□□□ -1.82
HMGB1-204ENST00000399489 HS3ST3B1Q9Y662 390 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 COLEC10Q9Y6Z7 277 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 PTPRUQ92729 1446 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 PTPRCP08575 1304 aa3.66□□□□□ -1.82
HMGB1-204ENST00000399489 TSPOAP1O95153 1857 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 TOP2BQ02880 1626 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 ADCY9O60503 1353 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 ROCK1Q13464 1354 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 EPRSP07814 1512 aaKnown RBP3.65□□□□□ -1.82
HMGB1-204ENST00000399489 KIAA0586Q9BVV6 1533 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 TEX13DA0A0J9YY54 714 aaPredicted RBP3.65□□□□□ -1.82
HMGB1-204ENST00000399489 GSTTP1A0A1W2PQM5 241 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 TMEM120BA0PK00 339 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 GOLGA6L9A6NEM1 432 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 OR5K3A6NET4 321 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 OR5K4A6NMS3 321 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 YJEFN3A6XGL0 299 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 SERPINE3A8MV23 424 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 SRPX2O60687 465 aaPredicted RBP3.65□□□□□ -1.82
HMGB1-204ENST00000399489 SERPINE2P07093 398 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 NQO2P16083 231 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 CCNOP22674 350 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 HSPA13P48723 471 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 ACLYP53396 1101 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 POLR2GP62487 172 aaKnown RBP eCLIP3.65□□□□□ -1.82
HMGB1-204ENST00000399489 EWSR1Q01844 656 aaKnown RBP eCLIP3.65□□□□□ -1.82
HMGB1-204ENST00000399489 CALCOCO2Q13137 446 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 GPR33Q49SQ1 333 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 SLC9C1Q4G0N8 1177 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 OTUD3Q5T2D3 398 aaPredicted RBP3.65□□□□□ -1.82
HMGB1-204ENST00000399489 FAM69BQ5VUD6 431 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 SLC22A10Q63ZE4 541 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 DMKNQ6E0U4 476 aaPredicted RBP3.65□□□□□ -1.82
HMGB1-204ENST00000399489 SLC27A4Q6P1M0 643 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 DEF8Q6ZN54 512 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 P4HA3Q7Z4N8 544 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 C5orf24Q7Z6I8 188 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 ACOT1Q86TX2 421 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 RNF130Q86XS8 419 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 LRRC8AQ8IWT6 810 aa3.65□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms