RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 TP53I3Q53FA7 332 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 FAM27D1Q5T7N8 215 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 CHMP1BQ7LBR1 199 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 TSEN54Q7Z6J9 526 aaKnown RBP15.13■□□□□ 0.01
PCDH1-203ENST00000394536 FBXO15Q8NCQ5 510 aaPredicted RBP15.13■□□□□ 0.01
PCDH1-203ENST00000394536 OTUB2Q96DC9 234 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 ZMYND19Q96E35 227 aaPredicted RBP15.13■□□□□ 0.01
PCDH1-203ENST00000394536 MRPL48Q96GC5 212 aaKnown RBP15.13■□□□□ 0.01
PCDH1-203ENST00000394536 LGR4Q9BXB1 951 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 SEMA4GQ9NTN9 838 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 PLEKHM1Q9Y4G2 1056 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 HYAL3O43820 417 aaPredicted RBP15.13■□□□□ 0.01
PCDH1-203ENST00000394536 SLC19A2O60779 497 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 RGS9O75916 674 aaPredicted RBP15.13■□□□□ 0.01
PCDH1-203ENST00000394536 PIPP12273 146 aaPredicted RBP15.13■□□□□ 0.01
PCDH1-203ENST00000394536 DNASE1P24855 282 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 GIFP27352 417 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 GBX2P52951 348 aaPredicted RBP15.13■□□□□ 0.01
PCDH1-203ENST00000394536 LGALS3BPQ08380 585 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 CAMKMTQ7Z624 323 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 SYT9Q86SS6 491 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 HMGB4Q8WW32 186 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 PINK1Q9BXM7 581 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 OR52D1Q9H346 318 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 ACSS1Q9NUB1 689 aaPredicted RBP15.13■□□□□ 0.01
PCDH1-203ENST00000394536 KCNE3Q9Y6H6 103 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 MAP1BP46821 2468 aaKnown RBP15.13■□□□□ 0.01
PCDH1-203ENST00000394536 RALGAPA2Q2PPJ7 1873 aa15.13■□□□□ 0.01
PCDH1-203ENST00000394536 TRAV27A0A087WT01 109 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 GRXCR1A8MXD5 290 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 PRRT4C9JH25 899 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 SMAD9O15198 467 aaKnown RBP15.12■□□□□ 0.01
PCDH1-203ENST00000394536 FABP7O15540 132 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 FLRT2O43155 660 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 PIP5K1CO60331 668 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 HK1P19367 917 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 ITGB7P26010 798 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 HMGA2P52926 109 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 GPR50Q13585 617 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 OCLNQ16625 522 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 SLC25A25Q6KCM7 469 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 NRROSQ86YC3 692 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 ZNF655Q8N720 491 aaPredicted RBP15.12■□□□□ 0.01
PCDH1-203ENST00000394536 ZFPM2Q8WW38 1151 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 RBM18Q96H35 190 aaKnown RBP15.12■□□□□ 0.01
PCDH1-203ENST00000394536 WFDC6Q9BQY6 131 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 SCN3AQ9NY46 2000 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 IQCMA0A1B0GVH7 501 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 SOX30O94993 753 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 C4BPBP20851 252 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 SF3A2Q15428 464 aaKnown RBP15.12■□□□□ 0.01
PCDH1-203ENST00000394536 PGGHGQ32M88 737 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 CCDC58Q4VC31 144 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 EIPR1Q53HC9 387 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 ABI3BPQ7Z7G0 1075 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 OR5W2Q8NH69 310 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 OR5K2Q8NHB8 316 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 PELI2Q9HAT8 420 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 NANSQ9NR45 359 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 BABAM2Q9NXR7 383 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 GPR34Q9UPC5 381 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 INSL6Q9Y581 213 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 ANXA3P12429 323 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 FUT1P19526 365 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 BSGP35613 385 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 SRP9P49458 86 aaKnown RBP15.12■□□□□ 0.01
PCDH1-203ENST00000394536 CSNK1G2P78368 415 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 DGLUCYQ7Z3D6 616 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 ADGRF3Q8IZF5 1079 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 GOT1L1Q8NHS2 421 aaPredicted RBP15.12■□□□□ 0.01
PCDH1-203ENST00000394536 ST6GAL2Q96JF0 529 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 HYLS1Q96M11 299 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 GINS4Q9BRT9 223 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 SLC28A3Q9HAS3 691 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 RDH8Q9NYR8 311 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 A4GNTQ9UNA3 340 aa15.12■□□□□ 0.01
PCDH1-203ENST00000394536 CARNS1A5YM72 827 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 LDB3O75112 727 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 SOX9P48436 509 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 PCBP3P57721 371 aaKnown RBP15.11■□□□□ 0.01
PCDH1-203ENST00000394536 GPNMBQ14956 572 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 FCN2Q15485 313 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 OR52E2Q8NGJ4 325 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 RSPH9Q9H1X1 276 aaPredicted RBP15.11■□□□□ 0.01
PCDH1-203ENST00000394536 SAGE1Q9NXZ1 904 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 NDOR1Q9UHB4 597 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 PHF11Q9UIL8 331 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 PPIL1Q9Y3C6 166 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 WDR90Q96KV7 1748 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 BLOC1S5-TXNDC5H3BN57 136 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 ATF4P18848 351 aaPredicted RBP15.11■□□□□ 0.01
PCDH1-203ENST00000394536 CD79BP40259 229 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 STAT5AP42229 794 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 PITPNBP48739 271 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 IFITM2Q01629 132 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 ASAH1Q13510 395 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 FAM220AQ7Z4H9 259 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 GID4Q8IVV7 300 aa15.11■□□□□ 0.01
PCDH1-203ENST00000394536 LRRC25Q8N386 305 aaPredicted RBP15.11■□□□□ 0.01
PCDH1-203ENST00000394536 OR7G1Q8NGA0 311 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms