RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SPIN2BQ9BPZ2 258 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 VPS25Q9BRG1 176 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 OR8D2Q9GZM6 311 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 RNF32Q9H0A6 362 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 MYH2Q9UKX2 1941 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 MYH1P12882 1939 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 MYH4Q9Y623 1939 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 TP53P04637 393 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 ARSBP15848 533 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 LAG3P18627 525 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 DOC2AQ14183 400 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 FIGNL1Q6PIW4 674 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 ISCA2Q86U28 154 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 SIAH1Q8IUQ4 282 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 CADM3Q8N126 398 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 TRIB3Q96RU7 358 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 PATZ1Q9HBE1 687 aaKnown RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 GGT3PA6NGU5 568 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 M0R3H8 397 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 GAPDHSO14556 408 aaPredicted RBP11.22□□□□□ -0.61
SYNPO-202ENST00000394243 IL33O95760 270 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 HOXB5P09067 269 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 HMGN3Q15651 99 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 OR2T4Q8NH00 348 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 STYXL1Q9Y6J8 313 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 PEX10O60683 326 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 SEC14L2O76054 403 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 MPIG6BO95866 241 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 GPX3P22352 226 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 FDXRP22570 491 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 TBCEQ15813 527 aaPredicted RBP11.22□□□□□ -0.61
SYNPO-202ENST00000394243 TECPR1Q7Z6L1 1165 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 SH3RF2Q8TEC5 729 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 F2RL3Q96RI0 385 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 MRI1Q9BV20 369 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 ZDHHC4Q9NPG8 344 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 SMCO4Q9NRQ5 59 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 RLIMQ9NVW2 624 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 PIK3C2BO00750 1634 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 FZD7O75084 574 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 TMEM225BP0DP42 221 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 PSMB10P40306 273 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 HTR6P50406 440 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 TTLL10Q6ZVT0 673 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 GPR155Q7Z3F1 870 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 TMEM200AQ86VY9 491 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 OR51D1Q8NGF3 324 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 APIPQ96GX9 242 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 DPH1Q9BZG8 443 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 CDC123O75794 336 aaPredicted RBP11.22□□□□□ -0.61
SYNPO-202ENST00000394243 ACRV1P26436 265 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 MEF2DQ14814 521 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 INAVAQ3KP66 663 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 OR10K2Q6IF99 312 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 LINC01599Q8WXQ3 324 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 IMP4Q96G21 291 aaKnown RBP11.22□□□□□ -0.61
SYNPO-202ENST00000394243 TXNDC15Q96J42 360 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF559Q9BR84 538 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 RRAGCQ9HB90 399 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 A0A087WZY1 265 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 CCDC85CA6NKD9 419 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 DVL2O14641 736 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 CYTIPO60759 359 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 ASGR2P07307 311 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 RD3LP0DJH9 198 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 NUDT1P36639 197 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 DUSP19Q8WTR2 217 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 GALNT9Q9HCQ5 603 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 IGSF5Q9NSI5 407 aa11.22□□□□□ -0.61
SYNPO-202ENST00000394243 CNOT2Q9NZN8 540 aaKnown RBP11.22□□□□□ -0.61
SYNPO-202ENST00000394243 PURGQ9UJV8 347 aaKnown RBP11.22□□□□□ -0.61
SYNPO-202ENST00000394243 I6L893 689 aaPredicted RBP11.21□□□□□ -0.61
SYNPO-202ENST00000394243 PTPN2P17706 415 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 HOXA10P31260 410 aaPredicted RBP11.21□□□□□ -0.61
SYNPO-202ENST00000394243 MLLT11Q13015 90 aaPredicted RBP11.21□□□□□ -0.61
SYNPO-202ENST00000394243 FCN2Q15485 313 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 AARDQ4LEZ3 155 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 CMIPQ8IY22 773 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 CHCHD4Q8N4Q1 142 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 OR2A12Q8NGT7 310 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 PKMYT1Q99640 499 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 DNTTIP1Q9H147 329 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 C2orf42Q9NWW7 574 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 RHBDD3Q9Y3P4 386 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 V9GY05 133 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 hCG_1807616A0A1W2PRN6 198 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 FEZF1A0PJY2 475 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 MT-CO2P00403 227 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 CX3CR1P49238 355 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF84P51523 738 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 KIAA1024LP59773 190 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 TXNDC8Q6A555 127 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 LYSMD2Q8IV50 215 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 SLC30A7Q8NEW0 376 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 C4orf36Q96KX1 117 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 DDX31Q9H8H2 851 aaKnown RBP11.21□□□□□ -0.61
SYNPO-202ENST00000394243 FAM86C1Q9NVL1 165 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 MEGF11A6BM72 1044 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 SYT7O43581 403 aa11.21□□□□□ -0.61
SYNPO-202ENST00000394243 RDH16O75452 317 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms