RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CPN2P22792 545 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ACTR1BP42025 376 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 SLC15A1P46059 708 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 RGS8P57771 180 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ACTR1AP61163 376 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 PRKCDQ05655 676 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ST3GAL3Q11203 375 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 CDK10Q15131 360 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 SOWAHCQ53LP3 525 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-204ENST00000392003 GDPGP1Q6ZNW5 385 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ZER1Q7Z7L7 766 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ASPGQ86U10 573 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 CDH26Q8IXH8 852 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 TDHQ8IZJ6 230 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 OR9A2Q8NGT5 310 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 RPLP0P6Q8NHW5 317 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 GAL3ST3Q96A11 431 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 TRNT1Q96Q11 434 aaKnown RBP9.03□□□□□ -0.96
COL6A3-204ENST00000392003 C12orf57Q99622 126 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 AICDAQ9GZX7 198 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 SAV1Q9H4B6 383 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-204ENST00000392003 RNF167Q9H6Y7 350 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 PHF11Q9UIL8 331 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 SDK1Q7Z5N4 2213 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 TRBV23-1A0A0A0MS06 115 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 GSAPA4D1B5 854 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 FAM170BA6NMN3 283 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 LOC110117498-PIK3R3F6TDL0 507 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 RGS5O15539 181 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 PRICKLE3O43900 615 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ADAM11O75078 769 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 SEMA7AO75326 666 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 RAB36O95755 333 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ZNF10P21506 573 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-204ENST00000392003 SEPHS1P49903 392 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 AP2S1P53680 142 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-204ENST00000392003 HTR4Q13639 388 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ZNF267Q14586 743 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-204ENST00000392003 EOGTQ5NDL2 527 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ARSKQ6UWY0 536 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 CD300LDQ6UXZ3 194 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 FAM26EQ8N5C1 309 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ZBTB44Q8NCP5 570 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 PROKR2Q8NFJ6 384 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 PIGXQ8TBF5 258 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 KAT2AQ92830 837 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ELP4Q96EB1 424 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 SARGQ9BW04 601 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ASPNQ9BXN1 380 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ACTRT3Q9BYD9 372 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 S1PR5Q9H228 398 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 C8orf33Q9H7E9 229 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-204ENST00000392003 APOBEC3BQ9UH17 382 aaKnown RBP9.03□□□□□ -0.96
COL6A3-204ENST00000392003 CD207Q9UJ71 328 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 MKLN1Q9UL63 735 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ZNF175Q9Y473 711 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 C2orf16Q68DN1 1984 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 TCRBV21S2A2A0A5A6 115 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 DSCR3O14972 297 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 PROM1O43490 865 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 CYP7B1O75881 506 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 AGR2O95994 175 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 HOXB3P14651 431 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-204ENST00000392003 CASP3P42574 277 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 HYAL2Q12891 473 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ZNF425Q6IV72 752 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 SLC27A4Q6P1M0 643 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 DBX2Q6ZNG2 339 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 USP30Q70CQ3 517 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 SVIPQ8NHG7 77 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 TSACCQ96A04 125 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-204ENST00000392003 PHF21AQ96BD5 680 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 LRR1Q96L50 414 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 WDR92Q96MX6 357 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 GDF15Q99988 308 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 C5orf42Q9H799 3197 aa9.02□□□□□ -0.96
COL6A3-204ENST00000392003 PRSS44E7EML9 344 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 TSPAN19P0C672 248 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 NUDT1P36639 197 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 C1orf94Q6P1W5 598 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 GALNT12Q8IXK2 581 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 GALNT11Q8NCW6 608 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 SLC9A6Q92581 669 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 KCNS3Q9BQ31 491 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 WFDC6Q9BQY6 131 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 OR2B2Q9GZK3 357 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 NXF2Q9GZY0 626 aaKnown RBP9.02□□□□□ -0.97
COL6A3-204ENST00000392003 TBC1D29Q9UFV1 150 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 CLEC2DQ9UHP7 191 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 SCML1Q9UN30 329 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 SPACA6W5XKT8 324 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 TRIOBPQ9H2D6 2365 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 POM121BA6NF01 834 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 HMX3A6NHT5 357 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 CPSF4LA6NMK7 179 aaKnown RBP9.02□□□□□ -0.97
COL6A3-204ENST00000392003 BTN3A3O00478 584 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 PRKYO43930 277 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 CSO75390 466 aaKnown RBP9.02□□□□□ -0.97
COL6A3-204ENST00000392003 SPNP16150 400 aa9.02□□□□□ -0.97
COL6A3-204ENST00000392003 COL9A1P20849 921 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms