RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CAMK2DQ13557 499 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 PSAPL1Q6NUJ1 521 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 DDX1Q92499 740 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 FOXRED1Q96CU9 486 aaPredicted RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 TRMT2BQ96GJ1 504 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 A0A0U1RQK1 487 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 ADARB1P78563 741 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF587Q96SQ5 575 aaPredicted RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 TMX2-CTNND1H3BSU7 103 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 DENRO43583 198 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 SLC22A5O76082 557 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 SCAF4O95104 1147 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 MC3RP41968 323 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 SMIM15Q7Z3B0 74 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 PRMT8Q9NR22 394 aaPredicted RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 SERTAD4Q9NUC0 356 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 YARS2Q9Y2Z4 477 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 PTGDR2Q9Y5Y4 395 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 XRN1Q8IZH2 1706 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 C2orf78A6NCI8 922 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 DCNP07585 359 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 MSR1P21757 451 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 SFTPDP35247 375 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF767PQ75MW2 155 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 GPR148Q8TDV2 347 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 UBXN10Q96LJ8 280 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 FEVQ99581 238 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 SLC25A31Q9H0C2 315 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 SYNPO2LQ9H987 977 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 CUTCQ9NTM9 273 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 ENTPD2Q9Y5L3 495 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 PRAF2O60831 178 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 BPIP17213 487 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 WNT4P56705 351 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 METTL2BQ6P1Q9 378 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 CDRT4Q8N9R6 151 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 BEST4Q8NFU0 473 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF578Q96N58 590 aaPredicted RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 PRRT1Q99946 306 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 HIF1ANQ9NWT6 349 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 GPR52Q9Y2T5 361 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 A0A0J9YY10 115 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 A0A1W2PQL4 384 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF736B4DX44 427 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 FAM72CH0Y354 149 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 SEC14L2O76054 403 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 CD79BP40259 229 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF542PQ5EBM4 170 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 FAM72AQ5TYM5 149 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 FAM72DQ6L9T8 149 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 COMMD6Q7Z4G1 85 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 FAM72BQ86X60 149 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 RBM12BQ8IXT5 1001 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 OR4D6Q8NGJ1 314 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 TOMM40LQ969M1 308 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 UPRTQ96BW1 309 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 F5H5K5 113 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF780AO75290 641 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 TFPTP0C1Z6 253 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 HNRNPA2B1P22626 353 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 PCGF2P35227 344 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 TSFMP43897 325 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ACVR1CQ8NER5 493 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 FNDC9Q8TBE3 224 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 FAM71F1Q96KD3 344 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 FUNDC2Q9BWH2 189 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ENKD1Q9H0I2 346 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 CHRDQ9H2X0 955 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 SOX17Q9H6I2 414 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ADAMTS6Q9UKP5 1117 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ENPP4Q9Y6X5 453 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF705FA8MVS1 300 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF705DP0CH99 300 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF705BP0CI00 300 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 IL1RNP18510 177 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 NCS1P62166 190 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 SIM1P81133 766 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ESCO2Q56NI9 601 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ESX1Q8N693 406 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 DAZAP1Q96EP5 407 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ATG4BQ9Y4P1 393 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 NME7Q9Y5B8 376 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 C17orf105B2RV13 164 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 FZD9O00144 591 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 FOXE1O00358 373 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 TPT1P13693 172 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 CNR2P34972 360 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 TGFBR3Q03167 851 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 RBPJQ06330 500 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 STEAP4Q687X5 459 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ALOXE3Q9BYJ1 711 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 HSD3B7Q9H2F3 369 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 SAV1Q9H4B6 383 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 TEX10Q9NXF1 929 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 CLN5O75503 358 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 STK17BO94768 372 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 RAB3DO95716 219 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 MPIG6BO95866 241 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ARSBP15848 533 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 THBS3P49746 956 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms