RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 NPTX1Q15818 432 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 MTX3Q5HYI7 312 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 GLT8D1Q68CQ7 371 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 SLC6A19Q695T7 634 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 INTS5Q6P9B9 1019 aaKnown RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 TEX261Q6UWH6 196 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 PAMR1Q6UXH9 720 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 SHISA6Q6ZSJ9 500 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 AMIGO2Q86SJ2 522 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 SLC15A4Q8N697 577 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 FDCSPQ8NFU4 85 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 OR4K1Q8NGD4 311 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 DDIT4LQ96D03 193 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 SMIM3Q9BZL3 60 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 EGLN1Q9GZT9 426 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 OR2AG1Q9H205 316 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 RDH14Q9HBH5 336 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 ADGRL2O95490 1459 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 GRIN2AQ12879 1464 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 IGKV3D-15A0A087WSY6 115 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 A0A0B4J2A0 478 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 FAM237BA0A1B0GVD1 139 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 FUOMA2VDF0 154 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 TMEM262E9PQX1 116 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 SOCS2O14508 198 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 SURF4O15260 269 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 CAPN5O15484 640 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 MSI1O43347 362 aaKnown RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 IGKV3-15P01624 115 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 ALPIP09923 528 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 ACPPP15309 386 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 ABCD3P28288 659 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 PBX2P40425 430 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 GATMP50440 423 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 FOXO4P98177 505 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 PMP22Q01453 160 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 MCL1Q07820 350 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 ELOCQ15369 112 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 COL5A1-AS1Q5SY13 56 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 ETFRF1Q6IPR1 90 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 JMJD6Q6NYC1 403 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 TECPR1Q7Z6L1 1165 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 OR6F1Q8NGZ6 308 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 PCNPQ8WW12 178 aaKnown RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 FYTTD1Q96QD9 318 aaKnown RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 MICU1Q9BPX6 476 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 MRPL37Q9BZE1 423 aaKnown RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 GPN2Q9H9Y4 310 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 HEBP1Q9NRV9 189 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 SHPKQ9UHJ6 478 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 UFC1Q9Y3C8 167 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 DHRS12A0PJE2 317 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 XKRY2A2RUG3 117 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 POM121CA8CG34 1229 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 K7ERQ8 282 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 PIRO00625 290 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 CTSLP07711 333 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 ELNP15502 786 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 CASP3P42574 277 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 XCR1P46094 333 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 C6orf52Q5T4I8 152 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 LSMEM1Q8N8F7 131 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 STYXQ8WUJ0 223 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 LRR1Q96L50 414 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 GLIS2Q9BZE0 524 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 PRDM14Q9GZV8 571 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 DHX33Q9H6R0 707 aaKnown RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 SYNPO2LQ9H987 977 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF160Q9HCG1 818 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 CISHQ9NSE2 258 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 CD300AQ9UGN4 299 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 KDM6BO15054 1643 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 C1orf226A1L170 272 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF320A2RRD8 509 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 GSG1L2A8MUP6 293 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 J3QW42 95 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 M0R3H8 397 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 XPNPEP2O43895 674 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 AIREO43918 545 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 C2P06681 752 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 ADRB2P07550 413 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 OR5AC1P0C628 307 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 CBR1P16152 277 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 CCNHP51946 323 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 HNRNPA3P51991 378 aaKnown RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 FOXC1Q12948 553 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 INPP5JQ15735 1006 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 ENTPD8Q5MY95 495 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 NPNTQ6UXI9 565 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 STAC2Q6ZMT1 411 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 TMUB2Q71RG4 321 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 LRRTM4Q86VH4 590 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 THNSL2Q86YJ6 484 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 CPEB3Q8NE35 698 aaKnown RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 REPS2Q8NFH8 660 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 CD99L2Q8TCZ2 262 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 C15orf40Q8WUR7 153 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 TANKQ92844 425 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 FAM71F1Q96KD3 344 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 HBEGFQ99075 208 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms