RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NIPAL2Q9H841 368 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 SLC6A5Q9Y345 797 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 ANTXRLA6NF34 631 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 J3KTA2 159 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 SGCBQ16585 318 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 AKR1C8PQ5T2L2 129 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 SCD5Q86SK9 330 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 LRRTM3Q86VH5 581 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 GIMAP1Q8WWP7 306 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 ZNF419Q96HQ0 510 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 NEDD4LQ96PU5 975 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 OR5M11Q96RB7 305 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 MYEF2Q9P2K5 600 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 PRODH2Q9UF12 536 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 SLC7A7Q9UM01 511 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 ZNF850A8MQ14 1090 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 TNFRSF10AO00220 468 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 SLC16A6O15403 523 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 CSF1P09603 554 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 PRRT3Q5FWE3 981 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 GPR157Q5UAW9 335 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 PODNL1Q6PEZ8 512 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 NRSN1Q8IZ57 195 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 ACBD4Q8NC06 268 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 STK35Q8TDR2 534 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 ADAMTS14Q8WXS8 1223 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 ACTR10Q9NZ32 417 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 MSRAQ9UJ68 235 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 MEIS3P1A6NDR6 274 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 EDIL3O43854 480 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 NDUFB2O95178 105 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 OPCMLQ14982 345 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 METAP1DQ6UB28 335 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 PTRH1Q86Y79 214 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 PCDHGA6Q9Y5G7 932 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 KRBOX1C9JBD0 128 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 GPR32O75388 356 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 NCR1O76036 304 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 AK1P00568 194 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 TACR1P25103 407 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 TEAD2Q15562 447 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 HRASLS5Q96KN8 279 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 KCNJ16Q9NPI9 418 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 ALKBH4Q9NXW9 302 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 OSGIN1Q9UJX0 560 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 SDK1Q7Z5N4 2213 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 HMX2A2RU54 273 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 ZNF623O75123 536 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 GSRP00390 522 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 PUS10Q3MIT2 529 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 ZNF585AQ6P3V2 769 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 LINC00299Q6ZSB3 139 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 ZNF546Q86UE3 836 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 OR1J4Q8NGS1 313 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 PRTFDC1Q9NRG1 225 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 HRASLS2Q9NWW9 162 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 KLHL21Q9UJP4 597 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 DCDC2BA2VCK2 349 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 ZNF736B4DX44 427 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 GABRPO00591 440 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 MUSKO15146 869 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 SOX9P48436 509 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 HSD11B2P80365 405 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 FCN2Q15485 313 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 C14orf28Q4W4Y0 310 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 SYNPRQ8TBG9 265 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 SLC7A6Q92536 515 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 ACTRT3Q9BYD9 372 aa18.43■□□□□ 0.54
CCDC88B-202ENST00000356786 PIP5K1CO60331 668 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 UBBP0CG47 229 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 UBCP0CG48 685 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 MAOAP21397 527 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 CERS1P27544 350 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 GATMP50440 423 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 ZNF140P52738 457 aaPredicted RBP18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 CTXN1P60606 82 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 HOXC5Q00444 222 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 SLC5A12Q1EHB4 618 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 HACD4Q5VWC8 232 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 TBPL2Q6SJ96 375 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 PAQR8Q8TEZ7 354 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 ZBED3Q96IU2 234 aaPredicted RBP18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 GALNT9Q9HCQ5 603 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 WASH6PQ9NQA3 447 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 SULT1C2O00338 296 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 E2F3O00716 465 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 SNAPINO95295 136 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 TMEM40Q8WWA1 233 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 FCRL1Q96LA6 429 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 PRRC1Q96M27 445 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 ZNF559Q9BR84 538 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 ANKRD33BA6NCL7 494 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 KIAA0355O15063 1070 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 VEGFDO43915 354 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 AKAIN1P0CW23 69 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 LIPCP11150 499 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 TPT1P13693 172 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 HRH2P25021 359 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 PSMB10P40306 273 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 PDX1P52945 283 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms