RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 GPR62Q9BZJ7 368 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 AP5M1Q9H0R1 490 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 TTYH1Q9H313 450 aaPredicted RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 IFT22Q9H7X7 185 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 SIRT3Q9NTG7 399 aaPredicted RBP6.36□□□□□ -1.39
VPS39-202ENST00000348544 HPF1Q9NWY4 346 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 ICKQ9UPZ9 632 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 CA5BQ9Y2D0 317 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 PRKAB1Q9Y478 270 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 FRMPD3Q5JV73 1810 aa6.36□□□□□ -1.39
VPS39-202ENST00000348544 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 ZC3H12DA2A288 527 aaKnown RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 ZNF840PA6NDX5 716 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 GLTPD2A6NH11 291 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 TMEM189-UBE2V1I3L0A0 370 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 AIPO00170 330 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 CACNB4O00305 520 aaPredicted RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 SYN3O14994 580 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 SEPT4O43236 478 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 SUSD5O60279 629 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 GALR3O60755 368 aaPredicted RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 SOCS5O75159 536 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 UBL3O95164 117 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 TGM6O95932 706 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 SNRPBP14678 240 aaKnown RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 RPL3P39023 403 aaKnown RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 THPOP40225 353 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 RAD52P43351 418 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 SNTB2Q13425 540 aaKnown RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 MELKQ14680 651 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 OR5M10Q6IEU7 315 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 CXCL17Q6UXB2 119 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 TPRG1Q6ZUI0 275 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 IKBIPQ70UQ0 350 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 C6orf120Q7Z4R8 191 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 SYT9Q86SS6 491 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 ASPGQ86U10 573 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 PAQR7Q86WK9 346 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 IZUMO1Q8IYV9 350 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 TMEM99Q8N816 258 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 DCAF4L2Q8NA75 395 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 OR5D16Q8NGK9 328 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 GCDHQ92947 438 aaPredicted RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 GIMAP5Q96F15 307 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 FAM46AQ96IP4 442 aaKnown RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 UQCC2Q9BRT2 126 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 GSDMCQ9BYG8 508 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 SLC6A15Q9H2J7 730 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 KCNK12Q9HB15 430 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 MIEF1Q9NQG6 463 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 EXOSC3Q9NQT5 275 aaKnown RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 MGAT4CQ9UBM8 478 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 IL20RAQ9UHF4 553 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 ENTPD4Q9Y227 616 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 PCDHGA9Q9Y5G4 932 aaKnown RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 OR2M5A3KFT3 312 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 FAM183AA6NL82 134 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 HNRNPCL2B2RXH8 293 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 FOXE1O00358 373 aaPredicted RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 ABCD4O14678 606 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 APOC3P02656 99 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 NPPBP16860 134 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 GSTM3P21266 225 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 NFYAP23511 347 aaPredicted RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 HTR1FP30939 366 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 CALCRP30988 508 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 RNF144AP50876 292 aaPredicted RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 TBPL1P62380 186 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 FLI1Q01543 452 aaPredicted RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 HSPB3Q12988 150 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 HTR4Q13639 388 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 HIST2H2AA3Q6FI13 130 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 ARL9Q6T311 187 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 NHLRC1Q6VVB1 395 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 ZNF783Q6ZMS7 281 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 HSD17B13Q7Z5P4 300 aaPredicted RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 RTN4RL1Q86UN2 441 aaPredicted RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 C17orf47Q8NEP4 570 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 OR51G2Q8NGK0 314 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 SCARB1Q8WTV0 552 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 ASZ1Q8WWH4 475 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 SCAMP4Q969E2 229 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 RFKQ969G6 155 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 RGMAQ96B86 450 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 PRRC1Q96M27 445 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 FCRL4Q96PJ5 515 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 ZNF607Q96SK3 696 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 TBX5Q99593 518 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 JAM3Q9BX67 310 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 ACTR6Q9GZN1 396 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 OR10A4Q9H209 315 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 WDR26Q9H7D7 661 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 EVA1AQ9H8M9 152 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 HINT3Q9NQE9 182 aaKnown RBP6.35□□□□□ -1.39
VPS39-202ENST00000348544 BABAM2Q9NXR7 383 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 NTMQ9P121 344 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 PFDN2Q9UHV9 154 aa6.35□□□□□ -1.39
VPS39-202ENST00000348544 CARNS1A5YM72 827 aa6.34□□□□□ -1.39
VPS39-202ENST00000348544 OR6C75A6NL08 312 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms