RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 TFGQ92734 400 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 SLC22A11Q9NSA0 550 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 CRKP46108 304 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 OR4D2P58180 307 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 THNSL2Q86YJ6 484 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 MAP3K3Q99759 626 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 ARL5AQ9Y689 179 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 PRAMEF33A0A0G2JMD5 474 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 NPEPPSL1A6NEC2 478 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 CD36P16671 472 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 TYMPP19971 482 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 CERS1P27544 350 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF627Q7L945 461 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 HSD17B13Q7Z5P4 300 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 HCAR2Q8TDS4 363 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 FKRPQ9H9S5 495 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 SLC9B1P1A6NJY1 282 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 HSPB2A8KAH6 182 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 EEF1E1-BLOC1S5C9J1V9 151 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 STAG3L3P0CL85 134 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 VIPR2P41587 438 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 HSPB2Q16082 182 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 CPSF6Q16630 551 aaKnown RBP eCLIP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 PRSS36Q5K4E3 855 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 TDRD10Q5VZ19 366 aaKnown RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 PROKR2Q8NFJ6 384 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM209Q96SK2 561 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 GMPPBQ9Y5P6 360 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 RPS3P23396 243 aaKnown RBP eCLIP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 KIAA1024LP59773 190 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 TEX44Q53QW1 395 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM31Q5JXX7 168 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 ATXN7L2Q5T6C5 722 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 CD163Q86VB7 1156 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 RAB24Q969Q5 203 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 HOXD1Q9GZZ0 328 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 GABARAPL1Q9H0R8 117 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 PRMT7Q9NVM4 692 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 SEC14L3Q9UDX4 400 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 RPL36Q9Y3U8 105 aaKnown RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 H3BN98 237 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 MID1O15344 667 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF789Q5FWF6 425 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 NUDT18Q6ZVK8 323 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 RDH10Q8IZV5 341 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 DEFB106AQ8N104 65 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 POC1BQ8TC44 478 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 LRRC58Q96CX6 371 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 MASTLQ96GX5 879 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 GPR78Q96P69 363 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 PLA2G3Q9NZ20 509 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 FCF1Q9Y324 198 aaKnown RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 MYL12BO14950 172 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 SLC22A5O76082 557 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 POU3F2P20265 443 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 TTPAP49638 278 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 PAQR6Q6TCH4 344 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF605Q86T29 641 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF596Q8TC21 504 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 DTD1Q8TEA8 209 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 AURKAIP1Q9NWT8 199 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 hCG_1818297A0A087WSY0 165 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 LATO43561 262 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 TOX4O94842 621 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 ADRB1P08588 477 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 GZMKP49863 264 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 RAB13P51153 203 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 CLDN12P56749 244 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 KCNAB2Q13303 367 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 YIF1BQ5BJH7 314 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 OR51B6Q9H340 312 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 PRAMEF12O95522 483 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 UROSP10746 265 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 GLRA2P23416 452 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 CCR7P32248 378 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 EMX2Q04743 252 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 IRF4Q15306 451 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 OR2T5Q6IEZ7 315 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 SLC26A9Q7LBE3 791 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 OR2T29Q8NH02 315 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 FBXO32Q969P5 355 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 CATSPERBQ9H7T0 1116 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 CCNL1Q9UK58 526 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 LOC105369274A0A096LPK9 316 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 HTRA2O43464 458 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 CSH1P0DML2 217 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 CSH2P0DML3 217 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 GRK5P34947 590 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 OR1G1P47890 313 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 SIX1Q15475 284 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 OR4N4Q8N0Y3 316 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 LMO3Q8TAP4 145 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 KLRG1Q96E93 195 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 CCNL2Q96S94 520 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 FAIM2Q9BWQ8 316 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 FBXL21Q9UKT6 434 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 MEGF11A6BM72 1044 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 SEC14L6B5MCN3 397 aa3.35□□□□□ -1.87
SYNE1-201ENST00000341594 YBEYP58557 167 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-201ENST00000341594 C3orf38Q5JPI3 329 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms