RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DGAT2L6Q6ZPD8 337 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 ABHD13Q7L211 337 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 LAX1Q8IWV1 398 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 CSNK1A1LQ8N752 337 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 SMAP2Q8WU79 429 aaPredicted RBP9.64□□□□□ -0.87
LIMA1-201ENST00000341247 TOE1Q96GM8 510 aaKnown RBP9.64□□□□□ -0.87
LIMA1-201ENST00000341247 SLC38A2Q96QD8 506 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 NELL2Q99435 816 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 PHF11Q9UIL8 331 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 SSR3Q9UNL2 185 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 CFL2Q9Y281 166 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 DUXAA6NLW8 204 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 SOCS6O14544 535 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 CSTF1Q05048 431 aaKnown RBP9.64□□□□□ -0.87
LIMA1-201ENST00000341247 TSPAN31Q12999 210 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 OCLNQ16625 522 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 CRTC2Q53ET0 693 aaPredicted RBP9.64□□□□□ -0.87
LIMA1-201ENST00000341247 TMEM163Q8TC26 289 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 ENKD1Q9H0I2 346 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 TBC1D17Q9HA65 648 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 C20orf141Q9NUB4 165 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 CALML5Q9NZT1 146 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 HCN3Q9P1Z3 774 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 KLHL3Q9UH77 587 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 KCNE5Q9UJ90 142 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 PCDHGB6Q9Y5F9 930 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 SLC22A7Q9Y694 548 aa9.64□□□□□ -0.87
LIMA1-201ENST00000341247 URADA6NGE7 173 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 SNX4O95219 450 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 TNFP01375 233 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 ST6GAL1P15907 406 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 GSTM3P21266 225 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 IGFBP4P22692 258 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 TNFSF8P32971 234 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 IFNGR2P38484 337 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 MAT1AQ00266 395 aaKnown RBP9.63□□□□□ -0.87
LIMA1-201ENST00000341247 HNRNPA0Q13151 305 aaKnown RBP9.63□□□□□ -0.87
LIMA1-201ENST00000341247 TAB1Q15750 504 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 NDUFA9Q16795 377 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 DCST2Q5T1A1 773 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 SLC36A4Q6YBV0 504 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 WDR88Q6ZMY6 472 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 PARGQ86W56 976 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 UBE2J2Q8N2K1 259 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 AVL9Q8NBF6 648 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 PROKR2Q8NFJ6 384 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 NLGN4YQ8NFZ3 816 aaPredicted RBP9.63□□□□□ -0.87
LIMA1-201ENST00000341247 TMED9Q9BVK6 235 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 MTHFD2LQ9H903 347 aaPredicted RBP9.63□□□□□ -0.87
LIMA1-201ENST00000341247 CCDC59Q9P031 241 aaKnown RBP9.63□□□□□ -0.87
LIMA1-201ENST00000341247 NDOR1Q9UHB4 597 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 PEX16Q9Y5Y5 336 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 A8MU76 341 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 C2CD4DB7Z1M9 353 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 GCGRP47871 477 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 ZNF155Q12901 538 aaPredicted RBP9.63□□□□□ -0.87
LIMA1-201ENST00000341247 KLHL12Q53G59 568 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 LAPTM4BQ86VI4 370 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 GATAD2AQ86YP4 633 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 CPOQ8IVL8 374 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 GHDCQ8N2G8 530 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 OR2L13Q8N349 312 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 OR4N2Q8NGD1 307 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 OR51G2Q8NGK0 314 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 NT5CQ8TCD5 201 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 FAM131CQ96AQ9 280 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 TTTY10Q9BZA0 68 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 SMURF1Q9HCE7 757 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 TIGARQ9NQ88 270 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 STUB1Q9UNE7 303 aa9.63□□□□□ -0.87
LIMA1-201ENST00000341247 A0A0A6YYC8 382 aaPredicted RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 C2orf74A8MZ97 194 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 I3L1I5 382 aaPredicted RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 SYT5O00445 386 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 PRODHO43272 600 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 OR10H2O60403 315 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 LALBAP00709 142 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 ALOX5P09917 674 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 THEGLP0DJG4 465 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 MAOBP27338 520 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 HTR2AP28223 471 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 SSTR4P31391 388 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 SDC2P34741 201 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 TSFMP43897 325 aaKnown RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 MAZP56270 477 aaKnown RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 HHEXQ03014 270 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 OR51A7Q8NH64 312 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 ACOT11Q8WXI4 607 aaPredicted RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 TM4SF19Q96DZ7 209 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 PTCHD1Q96NR3 888 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 HDHD5Q9BXW7 423 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 TRIM45Q9H8W5 580 aaPredicted RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 TXNL4BQ9NX01 149 aaKnown RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 USP36Q9P275 1121 aaKnown RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 PILRAQ9UKJ1 303 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 DIMT1Q9UNQ2 313 aaKnown RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 HRKO00198 91 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 IFI30P13284 250 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 DRD1P21728 446 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 PRKAR1BP31321 381 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms