RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 PARP8Q8N3A8 854 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 SLC16A11Q8NCK7 471 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 SLC38A5Q8WUX1 472 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 OR4K3Q96R72 315 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 BCL7BQ9BQE9 202 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 PLA2G2FQ9BZM2 168 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 MED17Q9NVC6 651 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF236Q9UL36 1845 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 SIPA1L1O43166 1804 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 ADAMTSL1Q8N6G6 1762 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 EME2A4GXA9 379 aaPredicted RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF99A8MXY4 864 aaPredicted RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 SGK494L7N484 410 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 ACOT8O14734 319 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 AHCYL1O43865 530 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 ITGA3P26006 1051 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 STARD6P59095 220 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 CRYZQ08257 329 aaKnown RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 C16orf72Q14CZ0 275 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 NDUFAF6Q330K2 333 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 PLET1Q6UQ28 207 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 TMEM239Q8WW34 195 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 UTP4Q969X6 686 aaKnown RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 LRRC46Q96FV0 321 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 LRRC61Q9BV99 259 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 DHCR7Q9UBM7 475 aaKnown RBP6.43□□□□□ -1.38
SF3B1-201ENST00000335508 PCDHGA3Q9Y5H0 932 aa6.43□□□□□ -1.38
SF3B1-201ENST00000335508 K7EQS6 105 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 PLOD2O00469 737 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ALOX12BO75342 701 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ITGA10O75578 1167 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 OR1E2P47887 323 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 PPP3R1P63098 170 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 C1orf189Q5VU69 101 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 PDSS2Q86YH6 399 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 C1orf210Q8IVY1 113 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 NRMQ8IXM6 262 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 SLC35F3Q8IY50 421 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 FTMTQ8N4E7 242 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ATP6V1C2Q8NEY4 427 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 OR2AJ1Q8NGZ0 328 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ADAMTS16Q8TE57 1224 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 SMPDL3BQ92485 455 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 OR2A5Q96R48 311 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 SLC6A17Q9H1V8 727 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 CXorf36Q9H7Y0 433 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 GPN2Q9H9Y4 310 aaPredicted RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 CD300AQ9UGN4 299 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 BOKQ9UMX3 212 aaPredicted RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 SYNGR4O95473 234 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 SDHBP21912 280 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 BSGP35613 385 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 CHRNEQ04844 493 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 C17orf67Q0P5P2 114 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 MZT2BQ6NZ67 158 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 RPTNQ6XPR3 784 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 FRRS1Q6ZNA5 592 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 FBXO27Q8NI29 283 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 PATE1Q8WXA2 126 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 HIST1H2AAQ96QV6 131 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ARPC5LQ9BPX5 153 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 TUBA1CQ9BQE3 449 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 MROQ9BYG7 248 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 SLC19A3Q9BZV2 496 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 GRHPRQ9UBQ7 328 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF879B4DU55 563 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 PHYHO14832 338 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 SEC14L5O43304 696 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ARRB2P32121 409 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 FAUP35544 74 aaKnown RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 SELENOVP59797 346 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ST3GAL4Q11206 333 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 IHHQ14623 411 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 HLA-BQ31612 363 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 CLEC12AQ5QGZ9 265 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 WBP2NLQ6ICG8 309 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ADNP2Q6IQ32 1131 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 MAVSQ7Z434 540 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 FGD2Q7Z6J4 655 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 TMEM151AQ8N4L1 468 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ESX1Q8N693 406 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 SLC35B4Q969S0 331 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 CHCHD6Q9BRQ6 235 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 S1PR5Q9H228 398 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 MCCC2Q9HCC0 563 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF624Q9P2J8 865 aaPredicted RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 A0A1W2PR48 441 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 OTOL1A6NHN0 477 aaPredicted RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 WASHC1A8K0Z3 465 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 BLOC1S5-TXNDC5H3BN57 136 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 METAP1P53582 386 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 TSPAN31Q12999 210 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 KIAA0040Q15053 153 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 SYPL1Q16563 259 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 DCST2Q5T1A1 773 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 PIWIL3Q7Z3Z3 882 aaKnown RBP6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF619Q8N2I2 560 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 CCL4L1Q8NHW4 92 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF675Q8TD23 568 aa6.42□□□□□ -1.38
SF3B1-201ENST00000335508 GRHL3Q8TE85 626 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms