RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 SCDO00767 359 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 RFXANKO14593 260 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 NDUFB5O43674 189 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 ZG16O60844 167 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 ANGPTL1O95841 491 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 AK1P00568 194 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 GABRA1P14867 456 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 SRD5A2P31213 254 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 ANXA11P50995 505 aaKnown RBP12.76□□□□□ -0.37
LIMS1-201ENST00000332345 EIPR1Q53HC9 387 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 WIPI1Q5MNZ9 446 aaPredicted RBP12.76□□□□□ -0.37
LIMS1-201ENST00000332345 DCST2Q5T1A1 773 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 CCNJQ5T5M9 372 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 ATAD3BQ5T9A4 648 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 ZNF585AQ6P3V2 769 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 RPTNQ6XPR3 784 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 GALNT10Q86SR1 603 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 MISPQ8IVT2 679 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 PM20D2Q8IYS1 436 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 ZNF527Q8NB42 609 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 OR14L1PQ8NHC6 308 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 PHF10Q8WUB8 498 aaKnown RBP12.76□□□□□ -0.37
LIMS1-201ENST00000332345 NEURL3Q96EH8 262 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 CCDC120Q96HB5 630 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 ITCHQ96J02 903 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 DSN1Q9H410 356 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 NPHS2Q9NP85 383 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 PNPLA3Q9NST1 481 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 TMEM45AQ9NWC5 275 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 ALKBH4Q9NXW9 302 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 TAS2R10Q9NYW0 307 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 FBXL2Q9UKC9 423 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 TRIM33Q9UPN9 1127 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 PCNX3Q9H6A9 2034 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 WDR1O75083 606 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 ANP32DO95626 131 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 KRT75O95678 551 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 OXSR1O95747 527 aaPredicted RBP12.75□□□□□ -0.37
LIMS1-201ENST00000332345 ACTL6AO96019 429 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 NCF2P19878 526 aaPredicted RBP12.75□□□□□ -0.37
LIMS1-201ENST00000332345 DPP4P27487 766 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 MSX1P28360 303 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 ATP4BP51164 291 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 DSCR4P56555 118 aaPredicted RBP12.75□□□□□ -0.37
LIMS1-201ENST00000332345 TXNL4AP83876 142 aaKnown RBP12.75□□□□□ -0.37
LIMS1-201ENST00000332345 SPTBN1Q01082 2364 aaKnown RBP12.75□□□□□ -0.37
LIMS1-201ENST00000332345 STX5Q13190 355 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 GANABQ14697 944 aaKnown RBP12.75□□□□□ -0.37
LIMS1-201ENST00000332345 SF3B4Q15427 424 aaKnown RBP eCLIP12.75□□□□□ -0.37
LIMS1-201ENST00000332345 NHSL2Q5HYW2 709 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 EMC4Q5J8M3 183 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 SAXO2Q658L1 398 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 VASNQ6EMK4 673 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 XKRXQ6PP77 449 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 APOOLQ6UXV4 268 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 C3P1Q6ZMU1 363 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 C16orf62Q7Z3J2 963 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 YRDCQ86U90 279 aaKnown RBP12.75□□□□□ -0.37
LIMS1-201ENST00000332345 FADS6Q8N9I5 356 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 OR5D16Q8NGK9 328 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 XAGE5Q8WWM1 108 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 ABTB1Q969K4 478 aaPredicted RBP12.75□□□□□ -0.37
LIMS1-201ENST00000332345 THOC1Q96FV9 657 aaKnown RBP12.75□□□□□ -0.37
LIMS1-201ENST00000332345 SDF2Q99470 211 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 TIMP4Q99727 224 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 INPP5KQ9BT40 448 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 OR2B2Q9GZK3 357 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 OR51I1Q9H343 314 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 RABEP2Q9H5N1 569 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 FBXO34Q9NWN3 711 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 MED11Q9P086 117 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 SPRR3Q9UBC9 169 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 DCTN4Q9UJW0 460 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 DKKL1Q9UK85 242 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 ICE1Q9Y2F5 2266 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 HRH3Q9Y5N1 445 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 KCNE3Q9Y6H6 103 aa12.75□□□□□ -0.37
LIMS1-201ENST00000332345 PHF3Q92576 2039 aaKnown RBP12.74□□□□□ -0.37
LIMS1-201ENST00000332345 A0A1W2PQD3 144 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 AHRRA9YTQ3 701 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 H3BNH8 94 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 ADAM10O14672 748 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 ZIC3O60481 467 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 STX11O75558 287 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 VIMP08670 466 aaKnown RBP12.74□□□□□ -0.37
LIMS1-201ENST00000332345 ZCCHC18P0CG32 403 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 OR12D1P0DN82 309 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 TROVE2P10155 538 aaKnown RBP eCLIP12.74□□□□□ -0.37
LIMS1-201ENST00000332345 BMP7P18075 431 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 AGAP20933 346 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 ENDOUP21128 410 aaKnown RBP12.74□□□□□ -0.37
LIMS1-201ENST00000332345 ACVR2AP27037 513 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 PTGER4P35408 488 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 MAGEA8P43361 318 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 ZFP36L2P47974 494 aaKnown RBP12.74□□□□□ -0.37
LIMS1-201ENST00000332345 ATP12AP54707 1039 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 RPS26P62854 115 aaKnown RBP12.74□□□□□ -0.37
LIMS1-201ENST00000332345 ARHGAP11BQ3KRB8 267 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 FLYWCH1Q4VC44 716 aa12.74□□□□□ -0.37
LIMS1-201ENST00000332345 METTL21CQ5VZV1 264 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms