RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TCEAL1Q15170 157 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 OTOP2Q7RTS6 562 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 OR4M1Q8NGD0 313 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 ZFP90Q8TF47 636 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 ECHDC3Q96DC8 303 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 BSCL2Q96G97 398 aaPredicted RBP13.15□□□□□ -0.3
CSPG4-201ENST00000308508 FAM53CQ9NYF3 392 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 MTMR11A4FU01 709 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 SNNO75324 88 aaPredicted RBP13.15□□□□□ -0.3
CSPG4-201ENST00000308508 ZDHHC11BP0C7U3 371 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 SLC35E2BP0CK96 405 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 CDK4P11802 303 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 RPS26P62854 115 aaKnown RBP13.15□□□□□ -0.3
CSPG4-201ENST00000308508 SCAPQ12770 1279 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 OR6T1Q8NGN1 323 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 OR5H6Q8NGV6 325 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 NANOS1Q8WY41 292 aaKnown RBP13.15□□□□□ -0.3
CSPG4-201ENST00000308508 CDC123O75794 336 aaPredicted RBP13.14□□□□□ -0.31
CSPG4-201ENST00000308508 OR4C11Q6IEV9 310 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 FAM199XQ6PEV8 388 aaPredicted RBP13.14□□□□□ -0.31
CSPG4-201ENST00000308508 ADAMTS18Q8TE60 1221 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 FRS2Q8WU20 508 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 TRMT2BQ96GJ1 504 aaKnown RBP13.14□□□□□ -0.31
CSPG4-201ENST00000308508 OCSTAMPQ9BR26 566 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 QRSL1Q9H0R6 528 aaKnown RBP13.14□□□□□ -0.31
CSPG4-201ENST00000308508 DLG5Q8TDM6 1919 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 KIAA0355O15063 1070 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 ITGAMP11215 1152 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 METAP1DQ6UB28 335 aaPredicted RBP13.14□□□□□ -0.31
CSPG4-201ENST00000308508 SLC30A7Q8NEW0 376 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 OR4K5Q8NGD3 323 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 OR5D14Q8NGL3 314 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 L3HYPDHQ96EM0 354 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 ACTRT3Q9BYD9 372 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 FAM221BA6H8Z2 402 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 FADS1O60427 444 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 NFYAP23511 347 aaPredicted RBP13.14□□□□□ -0.31
CSPG4-201ENST00000308508 SSTR2P30874 369 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 ACY1Q03154 408 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 RAET1LQ5VY80 246 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 PARP16Q8N5Y8 322 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 PQLC3Q8N755 202 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 B3GNT7Q8NFL0 401 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 FCRL1Q96LA6 429 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 MVB12BQ9H7P6 319 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 SMCO4Q9NRQ5 59 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 EGFP01133 1207 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 MT-ND4P03905 459 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 BDH1Q02338 343 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 HABP2Q14520 560 aaPredicted RBP13.14□□□□□ -0.31
CSPG4-201ENST00000308508 IRF4Q15306 451 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 MANEALQ5VSG8 457 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 NLRP8Q86W28 1048 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 STEAP2Q8NFT2 490 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 HUS1BQ8NHY5 278 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 GIMAP1Q8WWP7 306 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 HRASLS2Q9NWW9 162 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 PTGDR2Q9Y5Y4 395 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 MYO9BQ13459 2157 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 BCL9LQ86UU0 1499 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 CYB5BO43169 146 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 DPM1O60762 260 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 HBE1P02100 147 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 APOA2P02652 100 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 RNH1P13489 461 aaKnown RBP13.14□□□□□ -0.31
CSPG4-201ENST00000308508 KITLGP21583 273 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 CRABP1P29762 137 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 NUDT1P36639 197 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 FABP6P51161 128 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 TAGLNQ01995 201 aaKnown RBP13.14□□□□□ -0.31
CSPG4-201ENST00000308508 GAREM2Q75VX8 874 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 OR52A5Q9H2C5 316 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 POLR2CP19387 275 aaPredicted RBP13.14□□□□□ -0.31
CSPG4-201ENST00000308508 PCGF2P35227 344 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 CTXN1P60606 82 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 GALNT1Q10472 559 aaPredicted RBP13.14□□□□□ -0.31
CSPG4-201ENST00000308508 NRMQ8IXM6 262 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 C11orf84Q9BUA3 381 aaPredicted RBP13.14□□□□□ -0.31
CSPG4-201ENST00000308508 KCNK12Q9HB15 430 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 GKN1Q9NS71 199 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 POU2F3Q9UKI9 436 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 E7ESA3 106 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 NFKBIEO00221 500 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 TYRP14679 529 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 TYRP1P17643 537 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 FBLP22087 321 aaKnown RBP13.14□□□□□ -0.31
CSPG4-201ENST00000308508 ETV4P43268 484 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 TLE4Q04727 773 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 ARHGAP1Q07960 439 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 LCN10Q6JVE6 187 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 TLR9Q9NR96 1032 aa13.14□□□□□ -0.31
CSPG4-201ENST00000308508 PPP1R3DO95685 299 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 SMPD1P17405 629 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 PLA2G7Q13093 441 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 EMC10Q5UCC4 262 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 LBX2Q6XYB7 198 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 OR5L2Q8NGL0 311 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 LMX1AQ8TE12 382 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 ACOT11Q8WXI4 607 aaPredicted RBP13.13□□□□□ -0.31
CSPG4-201ENST00000308508 INPP5EQ9NRR6 644 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms