RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 IGFLR1Q9H665 355 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 ERVK-19Q9WJR5 959 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 ASB1Q9Y576 335 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 GDI2P50395 445 aaKnown RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 FXYD6P3P58550 94 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 SYPL1Q16563 259 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 DECR1Q16698 335 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 PCGF3Q3KNV8 242 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 ERN2Q76MJ5 926 aaKnown RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 ASPGQ86U10 573 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 MEX3DQ86XN8 651 aaKnown RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 SLC7A7Q9UM01 511 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 GRXCR1A8MXD5 290 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 SLC10A3P09131 477 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 S1PR1P21453 382 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 ELAVL4P26378 380 aaKnown RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 MRPL19P49406 292 aaKnown RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 CLLU1OSQ5K130 101 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 MEPCEQ7L2J0 689 aaKnown RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 OTOP2Q7RTS6 562 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 GTPBP8Q8N3Z3 284 aaPredicted RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 HMGCLL1Q8TB92 370 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 SMPDL3BQ92485 455 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 SORBS1Q9BX66 1292 aaKnown RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 CPEB1Q9BZB8 566 aaKnown RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 TBL1XR1Q9BZK7 514 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 INIPQ9NRY2 104 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 ACSS1Q9NUB1 689 aaPredicted RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 OR6C74A6NCV1 312 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 MYADML2A6NDP7 307 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 S100A2P29034 98 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 PRSS3P35030 304 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 OPCMLQ14982 345 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 TP53I3Q53FA7 332 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 SLC16A12Q6ZSM3 486 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 CYB561A3Q8NBI2 242 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 PHOSPHO1Q8TCT1 267 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 RIT1Q92963 219 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 C7orf34Q96L11 122 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 NOX3Q9HBY0 568 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 NDRG2Q9UN36 371 aaKnown RBP18.19■□□□□ 0.5
USP48-201ENST00000308271 A0A1B0GTL3 188 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 TGM6O95932 706 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 FURINP09958 794 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 COX20Q5RI15 118 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 LYPD4Q6UWN0 246 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 SLC9B2Q86UD5 537 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 SPNS2Q8IVW8 549 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 NEK7Q8TDX7 302 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 EMC3Q9P0I2 261 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 TMEM150CB9EJG8 249 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 CHP2O43745 196 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 TCRBP04435 133 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 AHRP35869 848 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 KCNJ10P78508 379 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 PTPRRQ15256 657 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 TEAD2Q15562 447 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 ITPRIPL2Q3MIP1 535 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 PLEKHN1Q494U1 663 aaPredicted RBP18.19■□□□□ 0.5
USP48-201ENST00000308271 ABCA11PQ4W5N1 156 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 ENPP7Q6UWV6 458 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 TM9SF4Q92544 642 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 RAB7BQ96AH8 199 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 CSF3RQ99062 836 aa18.19■□□□□ 0.5
USP48-201ENST00000308271 RBM7Q9Y580 266 aaKnown RBP18.19■□□□□ 0.5
USP48-201ENST00000308271 ZNF705EA8MWA4 302 aaPredicted RBP18.18■□□□□ 0.5
USP48-201ENST00000308271 B4DXG7 233 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 CD34P28906 385 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 GZMKP49863 264 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 RNF144AP50876 292 aaPredicted RBP18.18■□□□□ 0.5
USP48-201ENST00000308271 RNASE10Q5GAN6 216 aaKnown RBP18.18■□□□□ 0.5
USP48-201ENST00000308271 ELP4Q96EB1 424 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 DPEP2Q9H4A9 486 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 EGLN3Q9H6Z9 239 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 RLIMQ9NVW2 624 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 TMEFF2Q9UIK5 374 aaPredicted RBP18.18■□□□□ 0.5
USP48-201ENST00000308271 RNF13O43567 381 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 CSTAP01040 98 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 MPP7Q5T2T1 576 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 IL20RBQ6UXL0 311 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 KLHDC9Q8NEP7 349 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 HAVCR2Q8TDQ0 301 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 TMEM239Q8WW34 195 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 RTP3Q9BQQ7 232 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 OR52D1Q9H346 318 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 ASB6Q9NWX5 421 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 GSKIPQ9P0R6 139 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 COPS7AQ9UBW8 275 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 HOXC11O43248 304 aaPredicted RBP18.18■□□□□ 0.5
USP48-201ENST00000308271 MAS1P04201 325 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 CSF1P09603 554 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 XCR1P46094 333 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 RAB28P51157 221 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 MVB12BQ9H7P6 319 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 OR2S2Q9NQN1 319 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 TMEM88BA6NKF7 163 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 TLX3O43711 291 aaPredicted RBP18.18■□□□□ 0.5
USP48-201ENST00000308271 UBL3O95164 117 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 NDUFB2O95178 105 aa18.18■□□□□ 0.5
USP48-201ENST00000308271 PPP1R3DO95685 299 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms