RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 EIF4EBP2Q13542 120 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 TRAM2Q15035 370 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 GPR19Q15760 415 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 Q1RN00 199 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 NOXRED1Q6NXP6 359 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 SVBPQ8N300 66 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 SLC2A12Q8TD20 617 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 RERGQ96A58 199 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 FCRL1Q96LA6 429 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 PKP4Q99569 1192 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 C12orf57Q99622 126 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 TRBV5-4A0A0C4DH59 114 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 TOX4O94842 621 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 H1F0P07305 194 aaKnown RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 AKR1A1P14550 325 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ENGP17813 658 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 MAOAP21397 527 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 USF1P22415 310 aaPredicted RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 ATP5A1P25705 553 aaKnown RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 CD34P28906 385 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ZNF41P51814 821 aaPredicted RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 SNRPD1P62314 119 aaKnown RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 ACY1Q03154 408 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ACSM1Q08AH1 577 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 UPP1Q16831 310 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 CLLU1Q5K131 121 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 KIAA1324Q6UXG2 1013 aaKnown RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 FAM83FQ8NEG4 500 aaPredicted RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 OR8K5Q8NH50 307 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 NDNFQ8TB73 568 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 CNIH3Q8TBE1 160 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 PXYLP1Q8TE99 480 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ACTRT3Q9BYD9 372 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 P2RY12Q9H244 342 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ZNF286AQ9HBT8 521 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ACOXLQ9NUZ1 547 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 RPH3ALQ9UNE2 315 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 A0A0U1RQF3 1178 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 MYBPHLA2RUH7 354 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 MTMR11A4FU01 709 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 SCGB1C2P0DMR2 95 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 UGT2B7P16662 529 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 BDNFP23560 247 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 HOXC12P31275 282 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 WNT4P56705 351 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 WDR5P61964 334 aaKnown RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 GRIN2CQ14957 1233 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 HENMT1Q5T8I9 393 aaKnown RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 FAM199XQ6PEV8 388 aaPredicted RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 PGAP1Q75T13 922 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 TMC8Q8IU68 726 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 SLC35F3Q8IY50 421 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 LRRN4Q8WUT4 740 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 THEM6Q8WUY1 208 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 RAB11FIP5Q9BXF6 653 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 LIN7BQ9HAP6 207 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 IL21RQ9HBE5 538 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ABRACLQ9P1F3 81 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 RBPJLQ9UBG7 517 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ASB1Q9Y576 335 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 UBR3Q6ZT12 1888 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 A0A0B4J2A0 478 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 SCAMP3O14828 347 aaKnown RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 LRG1P02750 347 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 TACSTD2P09758 323 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 CKBP12277 381 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 TMEM11P17152 192 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 UQCRC2P22695 453 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 KCNC1P48547 511 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 CX3CR1P49238 355 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 PSPHP78330 225 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 TAP2Q03519 686 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ZNF169Q14929 603 aaPredicted RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 Q5PR19 223 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 PHYHD1Q5SRE7 291 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 SBSNQ6UWP8 590 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 LRRC28Q86X40 367 aaPredicted RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 MFSD6LQ8IWD5 586 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 GRIN3AQ8TCU5 1115 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 HCAR2Q8TDS4 363 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 BLNKQ8WV28 456 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 OR5P2Q8WZ92 322 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 C17orf62Q9BQA9 187 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 OR11A1Q9GZK7 315 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 SRRQ9GZT4 340 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 DNTTIP1Q9H147 329 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 SHPKQ9UHJ6 478 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 LIPT1Q9Y234 373 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 TAF1LQ8IZX4 1826 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 A0A1B0GVT2 93 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 A8MUA0 341 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 SOCS7O14512 581 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 KIAA0355O15063 1070 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ZIC2O95409 532 aaPredicted RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 CH25HO95992 272 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ALAS2P22557 587 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 NPBWR1P48145 328 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 HNRNPA3P51991 378 aaKnown RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 RRAS2P62070 204 aaPredicted RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 CTBSQ01459 385 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms