RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 RBAKQ9NYW8 714 aaPredicted RBP4.18□□□□□ -1.74
CD44-202ENST00000278385 NDRG3Q9UGV2 375 aa4.18□□□□□ -1.74
CD44-202ENST00000278385 DCDC2Q9UHG0 476 aa4.18□□□□□ -1.74
CD44-202ENST00000278385 BCAP29Q9UHQ4 241 aa4.18□□□□□ -1.74
CD44-202ENST00000278385 RBMX2Q9Y388 322 aaKnown RBP4.18□□□□□ -1.74
CD44-202ENST00000278385 NPTNQ9Y639 398 aa4.18□□□□□ -1.74
CD44-202ENST00000278385 IGSF9BQ9UPX0 1349 aa4.18□□□□□ -1.74
CD44-202ENST00000278385 LCTP09848 1927 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 MCM3APO60318 1980 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 TRAV24A0A0B4J272 114 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 A0A1B0GVL5 298 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 EPOPA6NHQ4 379 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 EIF4E1BA6NMX2 242 aaKnown RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 SERPINE3A8MV23 424 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 A8MXQ7 604 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 TMEM150CB9EJG8 249 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 C5orf67F2Z3F1 127 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 F8W810 466 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 J3QR06 171 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 CLDN5O00501 218 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 ITGB1BP1O14713 200 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 KCNN4O15554 427 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 BUD23O43709 281 aaKnown RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 SCO2O43819 266 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 SCN2BO60939 215 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 CTDNEP1O95476 244 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 TDP2O95551 362 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 ZBTB11O95625 1053 aaPredicted RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 PNMA6AP0CW24 399 aaPredicted RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 HRH2P25021 359 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 ITPKBP27987 946 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 PTGER4P35408 488 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 QARSP47897 775 aaKnown RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 SLC7A2P52569 658 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 RAD23BP54727 409 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 PSMC5P62195 406 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 POLR2GP62487 172 aaKnown RBP eCLIP4.17□□□□□ -1.74
CD44-202ENST00000278385 E2F1Q01094 437 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 PAX5Q02548 391 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 COL10A1Q03692 680 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 MBTD1Q05BQ5 628 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 SULT2A1Q06520 285 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 SLC3A1Q07837 685 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 IL10RBQ08334 325 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 BST2Q10589 180 aaKnown RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 ILF2Q12905 390 aaKnown RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 RBBP7Q16576 425 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 ZSWIM7Q19AV6 140 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 C18orf21Q32NC0 220 aaPredicted RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 UGT3A2Q3SY77 523 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 SYTL3Q4VX76 610 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 TMEM31Q5JXX7 168 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 CDKL4Q5MAI5 379 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 LIPNQ5VXI9 398 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 LIPKQ5VXJ0 399 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 CAPN13Q6MZZ7 669 aaPredicted RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 RHBDD2Q6NTF9 364 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 TMPRSS11FQ6ZWK6 438 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 NLRP9Q7RTR0 991 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 TRMT1LQ7Z2T5 733 aaKnown RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 SNX20Q7Z614 316 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 AMIGO2Q86SJ2 522 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 PRIMA1Q86XR5 153 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 CNGA4Q8IV77 575 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 TMEM123Q8N131 208 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 NAGSQ8N159 534 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 GABRG1Q8N1C3 465 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 C17orf78Q8N4C9 275 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 PAQR4Q8N4S7 273 aaPredicted RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 PROKR2Q8NFJ6 384 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 FANK1Q8TC84 345 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 SEMA4DQ92854 862 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 RPL3LQ92901 407 aaKnown RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 GLYATL1Q969I3 302 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 ADIPOR1Q96A54 375 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 RAB39BQ96DA2 213 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 PPP1R16AQ96I34 528 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 HPDLQ96IR7 371 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 PLEKHA8Q96JA3 519 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 ZNF514Q96K75 400 aaPredicted RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 VSTM2LQ96N03 204 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 ZNF582Q96NG8 517 aaPredicted RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 ZNF570Q96NI8 536 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 TSSK2Q96PF2 358 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 PRMT1Q99873 361 aaKnown RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 CNPY3Q9BT09 278 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 HINT2Q9BX68 163 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 KRTAP4-5Q9BYR2 181 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 NLNQ9BYT8 704 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 TM6SF2Q9BZW4 377 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 OPN3Q9H1Y3 402 aaPredicted RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 OR2AG1Q9H205 316 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 GOLPH3Q9H4A6 298 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 Q9N2K0 584 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 DMAP1Q9NPF5 467 aaPredicted RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 RGS18Q9NS28 235 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 ACSS1Q9NUB1 689 aaPredicted RBP4.17□□□□□ -1.74
CD44-202ENST00000278385 UFSP2Q9NUQ7 469 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 POT1Q9NUX5 634 aa4.17□□□□□ -1.74
CD44-202ENST00000278385 MS4A12Q9NXJ0 267 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms