RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 GFM1Q96RP9 751 aaKnown RBP15.52■□□□□ 0.08
VPS54-201ENST00000272322 MTIF3Q9H2K0 278 aaKnown RBP15.52■□□□□ 0.08
VPS54-201ENST00000272322 CACYBPQ9HB71 228 aaKnown RBP15.52■□□□□ 0.08
VPS54-201ENST00000272322 KLHL1Q9NR64 748 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 CES1P1Q9UKY3 287 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 WBP11Q9Y2W2 641 aaKnown RBP15.52■□□□□ 0.08
VPS54-201ENST00000272322 COL6A3P12111 3177 aa15.52■□□□□ 0.07
VPS54-201ENST00000272322 KIF26AQ9ULI4 1882 aaPredicted RBP15.52■□□□□ 0.07
VPS54-201ENST00000272322 A0A0G2JPF8 293 aa15.52■□□□□ 0.07
VPS54-201ENST00000272322 HNRNPCL2B2RXH8 293 aa15.52■□□□□ 0.07
VPS54-201ENST00000272322 HNRNPCL3B7ZW38 293 aa15.52■□□□□ 0.07
VPS54-201ENST00000272322 HNRNPCL4P0DMR1 293 aa15.52■□□□□ 0.07
VPS54-201ENST00000272322 IL7P13232 177 aa15.52■□□□□ 0.07
VPS54-201ENST00000272322 TCEA1P23193 301 aaKnown RBP15.52■□□□□ 0.07
VPS54-201ENST00000272322 KIR2DL1P43626 348 aaPredicted RBP15.52■□□□□ 0.07
VPS54-201ENST00000272322 MRPS15P82914 257 aaKnown RBP15.52■□□□□ 0.07
VPS54-201ENST00000272322 PRKCDQ05655 676 aa15.52■□□□□ 0.07
VPS54-201ENST00000272322 P2RY14Q15391 338 aa15.52■□□□□ 0.07
VPS54-201ENST00000272322 TMEM35AQ53FP2 167 aa15.52■□□□□ 0.07
VPS54-201ENST00000272322 MTFR2Q6P444 385 aa15.52■□□□□ 0.07
VPS54-201ENST00000272322 POLDIP3Q9BY77 421 aaKnown RBP15.52■□□□□ 0.07
VPS54-201ENST00000272322 HINT3Q9NQE9 182 aaKnown RBP15.52■□□□□ 0.07
VPS54-201ENST00000272322 SLC17A4Q9Y2C5 497 aa15.52■□□□□ 0.07
VPS54-201ENST00000272322 GXYLT2A0PJZ3 443 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 PSMD9O00233 223 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 FGF17O60258 216 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 HPGDSO60760 199 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 GUCY1B2O75343 617 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 KRT8P05787 483 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 LIMS3P0CW19 117 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 LIMS4P0CW20 117 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 LAMP2P13473 410 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 NOS3P29474 1203 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 GABRA3P34903 492 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 NDUFAF6Q330K2 333 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 CADM2Q8N3J6 435 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 TTLQ8NG68 377 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 OR4N2Q8NGD1 307 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 FAM3CQ92520 227 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 KCTD7Q96MP8 289 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 HRASLS2Q9NWW9 162 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 CCDC59Q9P031 241 aaKnown RBP15.51■□□□□ 0.07
VPS54-201ENST00000272322 SNX7Q9UNH6 387 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 UNC13CQ8NB66 2214 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 SHISA3A0PJX4 238 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 ZIC1Q15915 447 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 COX18Q8N8Q8 333 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 GATSQ8NAP1 163 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 ZNF681Q96N22 645 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 ACTRT3Q9BYD9 372 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 TAS2R7Q9NYW3 318 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 PTGFRNQ9P2B2 879 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 ZNF232Q9UNY5 417 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 LTBP2Q14767 1821 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 COL4A3Q01955 1670 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 ZNF670-ZNF695F2Z2N8 137 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 ACVR1BP36896 505 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 CASP3P42574 277 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 LSSP48449 732 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 CD83Q01151 205 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 SLC3A1Q07837 685 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 IL18Q14116 193 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 FIGLAQ6QHK4 219 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 ARL9Q6T311 187 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 PAMR1Q6UXH9 720 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 SLC36A4Q6YBV0 504 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 FRRS1Q6ZNA5 592 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 FAM26EQ8N5C1 309 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 TMEM163Q8TC26 289 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 OR2A14Q96R47 310 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 IL21RQ9HBE5 538 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 CMAHPQ9Y471 501 aa15.51■□□□□ 0.07
VPS54-201ENST00000272322 SLC30A4O14863 429 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 PRODHO43272 600 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 MRPL2Q5T653 305 aaKnown RBP15.5■□□□□ 0.07
VPS54-201ENST00000272322 MRM1Q6IN84 353 aaKnown RBP15.5■□□□□ 0.07
VPS54-201ENST00000272322 MFSD12Q6NUT3 480 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 WDR88Q6ZMY6 472 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 PEX5LQ8IYB4 626 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 OR13C2Q8NGS9 318 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 DIO2Q92813 273 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 KATNB1Q9BVA0 655 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 IFT27Q9BW83 186 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 PINK1Q9BXM7 581 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 ACAD8Q9UKU7 415 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 MRPS7Q9Y2R9 242 aaKnown RBP15.5■□□□□ 0.07
VPS54-201ENST00000272322 SLCO1B1Q9Y6L6 691 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 RTTNQ86VV8 2226 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 FAM25AB3EWG3 89 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 FAM25CB3EWG5 89 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 FAM25GB3EWG6 89 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 H0YGG7 62 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 CT62P0C5K7 136 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 PAICSP22234 425 aaKnown RBP15.5■□□□□ 0.07
VPS54-201ENST00000272322 ARF3P61204 181 aaPredicted RBP15.5■□□□□ 0.07
VPS54-201ENST00000272322 CDK5Q00535 292 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 ZNF836Q6ZNA1 936 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 SIRT6Q8N6T7 355 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 UFD1Q92890 307 aa15.5■□□□□ 0.07
VPS54-201ENST00000272322 BMFQ96LC9 184 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms