RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 TRAPPC13A5PLN9 417 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 BRINP1O60477 761 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 NKX2-2O95096 273 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 NTN1O95631 604 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 CBX7O95931 251 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 ZNF12P17014 697 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 RPL6Q02878 288 aaKnown RBP12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 STX4Q12846 297 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 ZNHIT3Q15649 155 aaPredicted RBP12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 TSTQ16762 297 aaKnown RBP12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 KLHL22Q53GT1 634 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 FIGNL1Q6PIW4 674 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 GALNT12Q8IXK2 581 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 NRMQ8IXM6 262 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 ZNF595Q8IYB9 648 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 CYP4Z2PQ8N1L4 340 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 OR8D4Q8NGM9 314 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 OR6Q1Q8NGQ2 317 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 RBM18Q96H35 190 aaKnown RBP12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 ALOXE3Q9BYJ1 711 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 RBCK1Q9BYM8 510 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 SLIRPQ9GZT3 109 aaKnown RBP12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 OR51E2Q9H255 320 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 AKIP1Q9NQ31 210 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 FBXO34Q9NWN3 711 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 IRAK4Q9NWZ3 460 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 CEP192Q8TEP8 1941 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 GXYLT2A0PJZ3 443 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 HYKKA2RU49 373 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 CDHR4A6H8M9 788 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 PEX12O00623 359 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 CLDN4O14493 209 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 AQP9O43315 295 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 RAB36O95755 333 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 THY1P04216 161 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 GRK5P34947 590 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 GPR4P46093 362 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 C1DQ13901 141 aaKnown RBP12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 FAM53BQ14153 422 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 LRIT3Q3SXY7 679 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 DGAT2L6Q6ZPD8 337 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 AMER2Q8N7J2 671 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 OR6C4Q8NGE1 309 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 MCFD2Q8NI22 146 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 HOXB13Q92826 284 aaPredicted RBP12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 FGF11Q92914 225 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 RIT1Q92963 219 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 PEX11GQ96HA9 241 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 SHDQ96IW2 340 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 CHCHD6Q9BRQ6 235 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 FOXQ1Q9C009 403 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 PRO3102Q9H379 93 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 EVA1AQ9H8M9 152 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 CAPN10Q9HC96 672 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 FBXL21Q9UKT6 434 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 DIMT1Q9UNQ2 313 aaKnown RBP12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 PLCL2Q9UPR0 1127 aa12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 LSM2Q9Y333 95 aaKnown RBP12.02□□□□□ -0.49
SPTLC1-201ENST00000262554 NPIPA5A0A0B4J1W7 369 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 NPIPA7E9PJI5 369 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 ARHGAP33O14559 1287 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 MYL12BO14950 172 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 PRODHO43272 600 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 KLF4O43474 513 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 FOXS1O43638 330 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 PIP5K1CO60331 668 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 FMO6PO60774 539 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 CTNSO60931 367 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 CSO75390 466 aaKnown RBP12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 NSA2O95478 260 aaKnown RBP12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 SCG5P05408 212 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 GKN3PP0CG01 181 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 NPIPA8P0DM63 369 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 CKMT1AP12532 417 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 GNSP15586 552 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 IDUAP35475 653 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 RAB15P59190 212 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 HNRNPKP61978 463 aaKnown RBP eCLIP12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 SPHARQ15513 63 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 COL13A1Q5TAT6 717 aaPredicted RBP12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 GARNL3Q5VVW2 1013 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 C19orf48Q6RUI8 117 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 IGFN1Q86VF2 1251 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 C11orf74Q86VG3 221 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 SDR16C5Q8N3Y7 309 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 NANOGP1Q8N7R0 232 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 PROKR2Q8NFJ6 384 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 OR52I1Q8NGK6 324 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 OPALINQ96PE5 141 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 LMF2Q9BU23 707 aaKnown RBP12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 TAPBPLQ9BX59 468 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 MMP27Q9H306 513 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 FOLH1BQ9HBA9 442 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 PRTFDC1Q9NRG1 225 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 SOHLH2Q9NX45 425 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 IL20Q9NYY1 176 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 TESQ9UGI8 421 aaKnown RBP12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 CLEC2DQ9UHP7 191 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 KCNE5Q9UJ90 142 aa12.01□□□□□ -0.49
SPTLC1-201ENST00000262554 SPTBN5Q9NRC6 3674 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms