RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PTNP21246 168 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 PAICSP22234 425 aaKnown RBP17.48■□□□□ 0.39
CPSF3-201ENST00000238112 HEPHL1Q6MZM0 1159 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 FAM111BQ6SJ93 734 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 CXXC5Q7LFL8 322 aaKnown RBP17.48■□□□□ 0.39
CPSF3-201ENST00000238112 CPOQ8IVL8 374 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 TOR1AIP2Q8NFQ8 470 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 OR51G2Q8NGK0 314 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 JPH3Q8WXH2 748 aaPredicted RBP17.48■□□□□ 0.39
CPSF3-201ENST00000238112 CDS1Q92903 461 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 FCRL4Q96PJ5 515 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 ZNF649Q9BS31 505 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 C6orf106Q9H6K1 298 aaPredicted RBP17.48■□□□□ 0.39
CPSF3-201ENST00000238112 SYNDIG1Q9H7V2 258 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 MTHFD2LQ9H903 347 aaPredicted RBP17.48■□□□□ 0.39
CPSF3-201ENST00000238112 RMI1Q9H9A7 625 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 B3GAT2Q9NPZ5 323 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 HINT3Q9NQE9 182 aaKnown RBP17.48■□□□□ 0.39
CPSF3-201ENST00000238112 WDR45Q9Y484 360 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 STON1Q9Y6Q2 735 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 GOLGA4Q13439 2230 aaKnown RBP17.48■□□□□ 0.39
CPSF3-201ENST00000238112 FAM240BA0A1B0GVZ2 78 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 SHISA3A0PJX4 238 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 FAM25AB3EWG3 89 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 FAM25CB3EWG5 89 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 FAM25GB3EWG6 89 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 SCAMP1O15126 338 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 LYRM1O43325 122 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 SCO2O43819 266 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 AGR2O95994 175 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 COL9A2Q14055 689 aaPredicted RBP17.47■□□□□ 0.39
CPSF3-201ENST00000238112 RPE65Q16518 533 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 THOC7Q6I9Y2 204 aaKnown RBP17.47■□□□□ 0.39
CPSF3-201ENST00000238112 MFSD12Q6NUT3 480 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 VITQ6UXI7 678 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 LRRC25Q8N386 305 aaPredicted RBP17.47■□□□□ 0.39
CPSF3-201ENST00000238112 OR7G2Q8NG99 324 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 GANCQ8TET4 914 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 FGF13Q92913 245 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 GDF15Q99988 308 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 NDEL1Q9GZM8 345 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 SLA2Q9H6Q3 261 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 PTGFRNQ9P2B2 879 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 FAM183AA6NL82 134 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 CDC42EP2O14613 210 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 SLC19A2O60779 497 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 CDC73Q6P1J9 531 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 ZNF438Q7Z4V0 828 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 GID4Q8IVV7 300 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 SIRT6Q8N6T7 355 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 KCT2Q8NC54 265 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 TMEM43Q9BTV4 400 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 RSPH9Q9H1X1 276 aaPredicted RBP17.47■□□□□ 0.39
CPSF3-201ENST00000238112 SLC17A4Q9Y2C5 497 aa17.47■□□□□ 0.39
CPSF3-201ENST00000238112 ANKRD34BA5PLL1 514 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 RFXAPO00287 272 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 KCNJ13O60928 360 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 ADH1BP00325 375 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 C5AR1P21730 350 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 EOGTQ5NDL2 527 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 ZNF425Q6IV72 752 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 PSRC1Q6PGN9 363 aaPredicted RBP17.46■□□□□ 0.39
CPSF3-201ENST00000238112 ZNF836Q6ZNA1 936 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 GLCCI1Q86VQ1 547 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 DUSP18Q8NEJ0 188 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 GAL3ST3Q96A11 431 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 NACC2Q96BF6 587 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 SENP5Q96HI0 755 aaPredicted RBP17.46■□□□□ 0.39
CPSF3-201ENST00000238112 JAM3Q9BX67 310 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 RNF32Q9H0A6 362 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 KCNN2Q9H2S1 579 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 UBQLN3Q9H347 655 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 NLKQ9UBE8 527 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 CLCA3PQ9Y6N3 262 aa17.46■□□□□ 0.39
CPSF3-201ENST00000238112 TBC1D3KA0A087X1G2 549 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 TBC1D3FA6NER0 549 aaPredicted RBP17.46■□□□□ 0.38
CPSF3-201ENST00000238112 RGS9O75916 674 aaPredicted RBP17.46■□□□□ 0.38
CPSF3-201ENST00000238112 GALP22466 123 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 GJA4P35212 333 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 RGS1Q08116 209 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 ADAM15Q13444 863 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 EIPR1Q53HC9 387 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 TBC1D3GQ6DHY5 549 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 VASNQ6EMK4 673 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 PLBD1Q6P4A8 553 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 PAMR1Q6UXH9 720 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 SLX1AQ9BQ83 275 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 ISG20L2Q9H9L3 353 aaKnown RBP17.46■□□□□ 0.38
CPSF3-201ENST00000238112 KLHL21Q9UJP4 597 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 RWDD3Q9Y3V2 267 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 ALG5Q9Y673 324 aa17.46■□□□□ 0.38
CPSF3-201ENST00000238112 LINC01553A4QN01 128 aa17.45■□□□□ 0.38
CPSF3-201ENST00000238112 OR6C70A6NIJ9 312 aa17.45■□□□□ 0.38
CPSF3-201ENST00000238112 RNF13O43567 381 aa17.45■□□□□ 0.38
CPSF3-201ENST00000238112 TRIM3O75382 744 aaPredicted RBP17.45■□□□□ 0.38
CPSF3-201ENST00000238112 ZNF888P0CJ79 500 aaPredicted RBP17.45■□□□□ 0.38
CPSF3-201ENST00000238112 ALAS2P22557 587 aa17.45■□□□□ 0.38
CPSF3-201ENST00000238112 RPS21P63220 83 aaKnown RBP17.45■□□□□ 0.38
CPSF3-201ENST00000238112 BDH1Q02338 343 aa17.45■□□□□ 0.38
CPSF3-201ENST00000238112 RIN1Q13671 783 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms