RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	RHCE	P18577	417 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	PEX2	P28328	305 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	LCN1	P31025	176 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	STAT5A	P42229	794 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	OR1E2	P47887	323 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	RNF4	P78317	190 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	GABRE	P78334	506 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	DNASE1L3	Q13609	305 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	PCOLCE	Q15113	449 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	EXT1	Q16394	746 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	ZSWIM7	Q19AV6	140 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	GRAMD1B	Q3KR37	738 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	FLYWCH1	Q4VC44	716 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	IGF2-AS	Q6U949	168 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	TSEN54	Q7Z6J9	526 aa	Known RBP	10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	CARM1	Q86X55	608 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	VRK2	Q86Y07	508 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	SVOPL	Q8N434	492 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	ZNF441	Q8N8Z8	693 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	ICA1L	Q8NDH6	482 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	OR5L2	Q8NGL0	311 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	OIT3	Q8WWZ8	545 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	TMBIM1	Q969X1	311 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	C8orf44	Q96CB5	159 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	ZNF300	Q96RE9	604 aa	Predicted RBP	10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	GAL3ST4	Q96RP7	486 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	MESP1	Q9BRJ9	268 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	C9orf16	Q9BUW7	83 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	AMBRA1	Q9C0C7	1298 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	HOXD1	Q9GZZ0	328 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	QRSL1	Q9H0R6	528 aa	Known RBP	10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	ARMC7	Q9H6L4	198 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	C8orf4	Q9NR00	106 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	KLHL28	Q9NXS3	571 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	DLL3	Q9NYJ7	618 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	NDUFAF4	Q9P032	175 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	SLC13A4	Q9UKG4	626 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	PRDM4	Q9UKN5	801 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	ABCG2	Q9UNQ0	655 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	ZNF443	Q9Y2A4	671 aa	Predicted RBP	10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	FAM32A	Q9Y421	112 aa	Known RBP	10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	PCDHGA10	Q9Y5H3	936 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	HS3ST3B1	Q9Y662	390 aa		10.88	□□□□□ -0.67
CLN6-223	ENST00000637823	PRAMEF25	A6NGN4	478 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	CDRT15L2	A8MXV6	281 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	NPIPB9	F8W1W9	429 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	SOCS6	O14544	535 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	UGT2B17	O75795	530 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	ZFAND5	O76080	213 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	EPPIN	O95925	133 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	NID1	P14543	1247 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	TNFRSF1B	P20333	461 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	SDHB	P21912	280 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	DLST	P36957	453 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	NR0B1	P51843	470 aa	Known RBP	10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	ATP12A	P54707	1039 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	EEF1A1	P68104	462 aa	Known RBP	10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	ZNF141	Q15928	474 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	NNAT	Q16517	81 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	MAPK14	Q16539	360 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	NRF1	Q16656	503 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	LRRC36	Q1X8D7	754 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	LIN52	Q52LA3	116 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	EIPR1	Q53HC9	387 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	FAM69B	Q5VUD6	431 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	KIRREL2	Q6UWL6	708 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	ZBTB49	Q6ZSB9	765 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	NDUFAF7	Q7L592	441 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	ZAR1	Q86SH2	424 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	CYP4Z1	Q86W10	505 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	SLC34A3	Q8N130	599 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	PACRGL	Q8N7B6	248 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	OR5K1	Q8NHB7	308 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	NUBPL	Q8TB37	319 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	M1AP	Q8TC57	530 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	NRBF2	Q96F24	287 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	IMMP1L	Q96LU5	166 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	ARHGDIG	Q99819	225 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	CIB1	Q99828	191 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	TACO1	Q9BSH4	297 aa	Known RBP	10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	VCX	Q9H320	206 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	COQ10B	Q9H8M1	238 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	KCNE5	Q9UJ90	142 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	ZNF223	Q9UK11	482 aa	Predicted RBP	10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	KCND3	Q9UK17	655 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	DTNA	Q9Y4J8	743 aa		10.87	□□□□□ -0.67
CLN6-223	ENST00000637823	TRBV11-1	A0A0K0K1C0	115 aa		10.86	□□□□□ -0.67
CLN6-223	ENST00000637823	SAC3D1	A6NKF1	404 aa		10.86	□□□□□ -0.67
CLN6-223	ENST00000637823		G3V2T6	193 aa		10.86	□□□□□ -0.67
CLN6-223	ENST00000637823		H0YJX3	145 aa		10.86	□□□□□ -0.67
CLN6-223	ENST00000637823	PEX12	O00623	359 aa		10.86	□□□□□ -0.67
CLN6-223	ENST00000637823	TERT	O14746	1132 aa	Known RBP	10.86	□□□□□ -0.67
CLN6-223	ENST00000637823	ADAMDEC1	O15204	470 aa		10.86	□□□□□ -0.67
CLN6-223	ENST00000637823	REM1	O75628	298 aa		10.86	□□□□□ -0.67
CLN6-223	ENST00000637823	DNAJB5	O75953	348 aa		10.86	□□□□□ -0.67
CLN6-223	ENST00000637823	DIRAS1	O95057	198 aa		10.86	□□□□□ -0.67
CLN6-223	ENST00000637823	COX6A1	P12074	109 aa		10.86	□□□□□ -0.67
CLN6-223	ENST00000637823	ZNF23	P17027	643 aa		10.86	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms