RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 CXorf36Q9H7Y0 433 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 IL21Q9HBE4 155 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 BCL2L10Q9HD36 194 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 CD93Q9NPY3 652 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TRIM36Q9NQ86 728 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 INPP5EQ9NRR6 644 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TDP1Q9NUW8 608 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RBFOX1Q9NWB1 397 aaKnown RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 LYARQ9NX58 379 aaKnown RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 COPZ2Q9P299 210 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF624Q9P2J8 865 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TNFRSF10DQ9UBN6 386 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 DUX4Q9UBX2 424 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TUBD1Q9UJT1 453 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 ACSL5Q9ULC5 683 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TMEM5Q9Y2B1 443 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SNX11Q9Y5W9 270 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 A0A0C4DFX4 3053 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 INMT-MINDY4F8WBC2 141 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 M0R129 80 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 LYRM1O43325 122 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 PRAMEF4O60810 478 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 CLEC3AO75596 197 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RGS9O75916 674 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 UBXN7O94888 489 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 ALX3O95076 343 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 ETHE1O95571 254 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 IFNGP01579 166 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 GBAP04062 536 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 BMP7P18075 431 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 MPIP34949 423 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TAS2R38P59533 333 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 STXBP1P61764 594 aaKnown RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 BTG1P62324 171 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 REEP5Q00765 189 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 BDH1Q02338 343 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TAP2Q03519 686 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TSPAN31Q12999 210 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 PDGFRLQ15198 375 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SSX1Q16384 188 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 CYP27C1Q4G0S4 372 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 C9orf64Q5T6V5 341 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 PRAMEF9Q5VWM5 478 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 PODNL1Q6PEZ8 512 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 QSOX2Q6ZRP7 698 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RASSF6Q6ZTQ3 369 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TECPR1Q7Z6L1 1165 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 PLA2G15Q8NCC3 412 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 OR7G1Q8NGA0 311 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 OR52N1Q8NH53 320 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 NEIL3Q8TAT5 605 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 ADAMTS15Q8TE58 950 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 CREB3L4Q8TEY5 395 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RAB8BQ92930 207 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 ELSPBP1Q96BH3 223 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 LINC00615Q96LM1 132 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SCNM1Q9BWG6 230 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 MS4A8Q9BY19 250 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RANBP3Q9H6Z4 567 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 FBXL12Q9NXK8 326 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TAS2R16Q9NYV7 291 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TAC3Q9UHF0 121 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 KMT2EQ8IZD2 1858 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SPENQ96T58 3664 aaKnown RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 CCDC88CQ9P219 2028 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 LRP4O75096 1905 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 GPR89AB7ZAQ6 455 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 EMC8O43402 210 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 KLHL18O94889 574 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 GPR89BP0CG08 455 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 OR12D1P0DN82 309 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 STOMP27105 288 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RBMS1P29558 406 aaKnown RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TLX1P31314 330 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 FGF9P31371 208 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 CRYBB2P43320 205 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 PRKAG1P54619 331 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 ABATP80404 500 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RGS1Q08116 209 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SF1Q15637 639 aaKnown RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SYT14P1Q58G82 188 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RPS26P11Q5JNZ5 115 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 CEP78Q5JTW2 689 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 ENTPD8Q5MY95 495 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF648Q5T619 568 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 CNIH2Q6PI25 160 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 CREB3L2Q70SY1 520 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SPATC1Q76KD6 591 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 NKAIN3Q8N8D7 197 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 FAM181AQ8N9Y4 354 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 ATP6V1C2Q8NEY4 427 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SNIP1Q8TAD8 396 aaKnown RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 ZFAND1Q8TCF1 268 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 DNAJA4Q8WW22 397 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 SLC9A6Q92581 669 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TMEM203Q969S6 136 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 RFT1Q96AA3 541 aa3.74□□□□□ -1.81
SCN1A-214ENST00000637038 C7orf50Q9BRJ6 194 aaKnown RBP3.74□□□□□ -1.81
SCN1A-214ENST00000637038 TTYH2Q9BSA4 534 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms