RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ZSCAN1Q8NBB4 408 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 PMEPA1Q969W9 287 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 ALPK1Q96QP1 1244 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 FBXO8Q9NRD0 319 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 C14orf105Q9NVL8 296 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 KLHL28Q9NXS3 571 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 TTC36A6NLP5 189 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 TPST2O60704 377 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 ELAVL4P26378 380 aaKnown RBP15.62■□□□□ 0.09
CLN3-252ENST00000636907 POLR2IP36954 125 aaKnown RBP15.62■□□□□ 0.09
CLN3-252ENST00000636907 BLMHQ13867 455 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 FLYWCH1Q4VC44 716 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 LIN52Q52LA3 116 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 TAGAPQ8N103 731 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 PIK3C3Q8NEB9 887 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 ZNF555Q8NEP9 628 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 OR9Q2Q8NGE9 314 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 OR14A16Q8NHC5 309 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 PMM1Q92871 262 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 DAZLQ92904 295 aaKnown RBP15.62■□□□□ 0.09
CLN3-252ENST00000636907 PRRC1Q96M27 445 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 SLC46A1Q96NT5 459 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 FEVQ99581 238 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 NUDT9Q9BW91 350 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 PRR14Q9BWN1 585 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 AKIRIN1Q9H9L7 192 aaPredicted RBP15.62■□□□□ 0.09
CLN3-252ENST00000636907 KRT84Q9NSB2 600 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 SEMA4GQ9NTN9 838 aa15.62■□□□□ 0.09
CLN3-252ENST00000636907 VSTM2BA6NLU5 285 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 IDSB3KWA1 339 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 MEN1O00255 615 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 PRKNO60260 465 aaPredicted RBP15.61■□□□□ 0.09
CLN3-252ENST00000636907 CNOT3O75175 753 aaKnown RBP15.61■□□□□ 0.09
CLN3-252ENST00000636907 CCNB2O95067 398 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 HEXBP07686 556 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 GUSBP08236 651 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 NID1P14543 1247 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 RNF144AP50876 292 aaPredicted RBP15.61■□□□□ 0.09
CLN3-252ENST00000636907 RGS8P57771 180 aaPredicted RBP15.61■□□□□ 0.09
CLN3-252ENST00000636907 FGD3Q5JSP0 725 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 TTC23Q5W5X9 447 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 TMEM154Q6P9G4 183 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 BCORP1Q8N888 145 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 MUS81Q96NY9 551 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 PSD2Q9BQI7 771 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 RIBC2Q9H4K1 309 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 CTPS2Q9NRF8 586 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 PNPLA3Q9NST1 481 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 CBLCQ9ULV8 474 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 OR10H1Q9Y4A9 318 aa15.61■□□□□ 0.09
CLN3-252ENST00000636907 LOC100130705A0A1B0GUX0 176 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 SYNDIG1LA6NDD5 238 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 C4orf47A7E2U8 309 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 ITGAMP11215 1152 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 ANXA8P13928 327 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 HOXC5Q00444 222 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 TCF15Q12870 199 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 SEC23BQ15437 767 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 EIPR1Q53HC9 387 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 DCST1Q5T197 706 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 MRPL2Q5T653 305 aaKnown RBP15.6■□□□□ 0.09
CLN3-252ENST00000636907 ART5Q96L15 291 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 SPSB2Q99619 263 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 FUZQ9BT04 418 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 FNDC11Q9BVV2 318 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 SLC39A1Q9NY26 324 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 CFL2Q9Y281 166 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 IGHV3-20A0A0C4DH32 117 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 B4E171 279 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 SLC16A6O15403 523 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 ALOX12BO75342 701 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 SEC24DO94855 1032 aaPredicted RBP15.6■□□□□ 0.09
CLN3-252ENST00000636907 CYP4B1P13584 511 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 AGXTP21549 392 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 TSPAN7P41732 249 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 PPICP45877 212 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 SMIM11AP58511 58 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 PDZK1Q5T2W1 519 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 RNF220Q5VTB9 566 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 ZNF770Q6IQ21 691 aaPredicted RBP15.6■□□□□ 0.09
CLN3-252ENST00000636907 ANKRD37Q7Z713 158 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 OR1N1Q8NGS0 311 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 FKBP10Q96AY3 582 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 LMF1Q96S06 567 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 CMKLR1Q99788 373 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 NIPSNAP1Q9BPW8 284 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 MESP1Q9BRJ9 268 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 NXF5Q9H1B4 397 aaKnown RBP15.6■□□□□ 0.09
CLN3-252ENST00000636907 SLC26A1Q9H2B4 701 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 PARD6AQ9NPB6 346 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 MAN2C1Q9NTJ4 1040 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 SCOCQ9UIL1 159 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 TMCC3Q9ULS5 477 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 NTNG1Q9Y2I2 539 aa15.6■□□□□ 0.09
CLN3-252ENST00000636907 CACNA1HO95180 2353 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 A0A1W2PRQ8 180 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 CDHR4A6H8M9 788 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 ARRDC5A6NEK1 342 aa15.59■□□□□ 0.09
CLN3-252ENST00000636907 CPSF4LA6NMK7 179 aaKnown RBP15.59■□□□□ 0.09
CLN3-252ENST00000636907 FAAHO00519 579 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms