RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 HP1BP3Q5SSJ5 553 aaPredicted RBP12.87□□□□□ -0.35
CLN3-249ENST00000636685 HIST2H2BDQ6DRA6 164 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 NPSR1Q6W5P4 371 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 EXOC3L1Q86VI1 746 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 MYLK4Q86YV6 388 aaPredicted RBP12.87□□□□□ -0.35
CLN3-249ENST00000636685 PIAS4Q8N2W9 510 aaPredicted RBP12.87□□□□□ -0.35
CLN3-249ENST00000636685 RNF214Q8ND24 703 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 CFAP36Q96G28 342 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 ADGRG7Q96K78 797 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 BTBD9Q96Q07 612 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 PIMREGQ9BSJ6 248 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 BHLHE41Q9C0J9 482 aaPredicted RBP12.87□□□□□ -0.35
CLN3-249ENST00000636685 PTGES2Q9H7Z7 377 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 FLRT3Q9NZU0 649 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 ESPNB1AK53 854 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 GMFGO60234 142 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 ERAL1O75616 437 aaKnown RBP12.86□□□□□ -0.35
CLN3-249ENST00000636685 ATP1B1P05026 303 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 FABP6P51161 128 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 PNLIPRP2P54317 469 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 SPOCK1Q08629 439 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 PPA1Q15181 289 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 TMEM44Q2T9K0 475 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 FAM180BQ6P0A1 224 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 B3GLCTQ6Y288 498 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 Q6ZSR9 355 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 RNF10Q8N5U6 811 aaKnown RBP12.86□□□□□ -0.35
CLN3-249ENST00000636685 CEP112Q8N8E3 955 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 OR4N2Q8NGD1 307 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 TMEFF2Q9UIK5 374 aaPredicted RBP12.86□□□□□ -0.35
CLN3-249ENST00000636685 METRNQ9UJH8 293 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 POU2F3Q9UKI9 436 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 CES1P1Q9UKY3 287 aa12.86□□□□□ -0.35
CLN3-249ENST00000636685 FAM157AC9JC47 383 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 TNFSF11O14788 317 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 FADS1O60427 444 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 WISP3O95389 354 aaPredicted RBP12.85□□□□□ -0.35
CLN3-249ENST00000636685 S100BP04271 92 aaPredicted RBP12.85□□□□□ -0.35
CLN3-249ENST00000636685 CD1DP15813 335 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 ITGADQ13349 1161 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 CUL3Q13618 768 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 CARTPTQ16568 116 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 GLYR1Q49A26 553 aaPredicted RBP12.85□□□□□ -0.35
CLN3-249ENST00000636685 IQCCQ4KMZ1 466 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 MIDNQ504T8 468 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 PPIL6Q8IXY8 311 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 OR2W6PQ8NHA6 318 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 UHMK1Q8TAS1 419 aaKnown RBP12.85□□□□□ -0.35
CLN3-249ENST00000636685 DUSP19Q8WTR2 217 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 FOXN4Q96NZ1 517 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 NAT9Q9BTE0 207 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 TRIM5Q9C035 493 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 TSC22D4Q9Y3Q8 395 aa12.85□□□□□ -0.35
CLN3-249ENST00000636685 A0A0A6YYJ9 748 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 GOLGA6L10A6NI86 522 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 SLCO1B7G3V0H7 640 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 K7EPI3 171 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 TMPRSS2O15393 492 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 RGS9O75916 674 aaPredicted RBP12.84□□□□□ -0.35
CLN3-249ENST00000636685 LYZL6O75951 148 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 KLK1P06870 262 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 ZNF23P17027 643 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 CSNK2A2P19784 350 aaPredicted RBP12.84□□□□□ -0.35
CLN3-249ENST00000636685 PHEXP78562 749 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 PDCD2Q16342 344 aaPredicted RBP12.84□□□□□ -0.35
CLN3-249ENST00000636685 TMEM201Q5SNT2 666 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 RNASEH2BQ5TBB1 312 aaKnown RBP12.84□□□□□ -0.35
CLN3-249ENST00000636685 SLC48A1Q6P1K1 146 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 SLC22A25Q6T423 547 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 TUSC5Q8IXB3 177 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 OR2V1Q8NHB1 315 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 ABHD3Q8WU67 409 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 RADILQ96JH8 1075 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 NPAS1Q99742 590 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 USB1Q9BQ65 265 aaKnown RBP12.84□□□□□ -0.35
CLN3-249ENST00000636685 ZNF696Q9H7X3 374 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 CAB39LQ9H9S4 337 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 POPDC3Q9HBV1 291 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 SAYSD1Q9NPB0 183 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 SDHAF3Q9NRP4 125 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 PAQR5Q9NXK6 330 aaPredicted RBP12.84□□□□□ -0.35
CLN3-249ENST00000636685 OPTCQ9UBM4 332 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 GUCA1BQ9UMX6 200 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 VDAC3Q9Y277 283 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 PCDHGA11Q9Y5H2 935 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 PCDHA9Q9Y5H5 950 aa12.84□□□□□ -0.35
CLN3-249ENST00000636685 VWFP04275 2813 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 A0A0J9YW62 118 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 GOLGA8QA0A0J9YX86 632 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 LRP5LA4QPB2 252 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 GOLGA8OA6NCC3 632 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 ZNF814B7Z6K7 855 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 GOLGA8NF8WBI6 632 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 GOLGA8RI6L899 631 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 NDUFS8O00217 210 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 SMAD9O15198 467 aaKnown RBP12.83□□□□□ -0.36
CLN3-249ENST00000636685 ADAMDEC1O15204 470 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 CTAGE8P0CG41 777 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 CPSF6Q16630 551 aaKnown RBP eCLIP12.83□□□□□ -0.36
CLN3-249ENST00000636685 GTF2IRD2BQ6EKJ0 949 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms