RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 C9JVG2 144 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 CCL21O00585 134 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 AQP7O14520 342 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 CBR3O75828 277 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 KCNK2O95069 426 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 ZIC2O95409 532 aaPredicted RBP18.91■□□□□ 0.62
CLN3-240ENST00000631023 MATN1P21941 496 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 C3AR1Q16581 482 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 MTFR2Q6P444 385 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 TRIML2Q8N7C3 387 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 GOT1L1Q8NHS2 421 aaPredicted RBP18.91■□□□□ 0.62
CLN3-240ENST00000631023 FAM57AQ8TBR7 257 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 RNF138Q8WVD3 245 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 STON2Q8WXE9 905 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 CDS1Q92903 461 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 PANX1Q96RD7 426 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 UBQLN3Q9H347 655 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 SUCOQ9UBS9 1254 aaKnown RBP18.91■□□□□ 0.62
CLN3-240ENST00000631023 TINAGQ9UJW2 476 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 MED12Q93074 2177 aa18.91■□□□□ 0.62
CLN3-240ENST00000631023 PTPN13Q12923 2485 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 FADS1O60427 444 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 UTS2O95399 124 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 IGKV1D-16P01601 117 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 HPNP05981 417 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 TPOP07202 933 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 ESRRAP11474 423 aaPredicted RBP18.9■□□□□ 0.62
CLN3-240ENST00000631023 PTPN6P29350 595 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 POLR2JP52435 117 aaKnown RBP18.9■□□□□ 0.62
CLN3-240ENST00000631023 IRX1P78414 480 aaPredicted RBP18.9■□□□□ 0.62
CLN3-240ENST00000631023 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.9■□□□□ 0.62
CLN3-240ENST00000631023 FIGNL1Q6PIW4 674 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 FGD2Q7Z6J4 655 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 PLCZ1Q86YW0 608 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 WDSUB1Q8N9V3 476 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 SARAFQ96BY9 339 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 TBL1XR1Q9BZK7 514 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 HHATLQ9HCP6 504 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 LIPGQ9Y5X9 500 aa18.9■□□□□ 0.62
CLN3-240ENST00000631023 BCKDKO14874 412 aa18.89■□□□□ 0.62
CLN3-240ENST00000631023 ZNHIT1O43257 154 aa18.89■□□□□ 0.62
CLN3-240ENST00000631023 SCO2O43819 266 aa18.89■□□□□ 0.62
CLN3-240ENST00000631023 ATP6V1C1P21283 382 aa18.89■□□□□ 0.62
CLN3-240ENST00000631023 CHI3L1P36222 383 aaPredicted RBP18.89■□□□□ 0.62
CLN3-240ENST00000631023 MRPL19P49406 292 aaKnown RBP18.89■□□□□ 0.62
CLN3-240ENST00000631023 DOLPP1Q86YN1 238 aa18.89■□□□□ 0.62
CLN3-240ENST00000631023 OTUB1Q96FW1 271 aaPredicted RBP18.89■□□□□ 0.62
CLN3-240ENST00000631023 SLC35G5Q96KT7 338 aa18.89■□□□□ 0.62
CLN3-240ENST00000631023 OR7D2Q96RA2 312 aa18.89■□□□□ 0.62
CLN3-240ENST00000631023 RMND5AQ9H871 391 aa18.89■□□□□ 0.62
CLN3-240ENST00000631023 NPHS2Q9NP85 383 aa18.89■□□□□ 0.62
CLN3-240ENST00000631023 SERHLQ9NQF3 203 aa18.89■□□□□ 0.62
CLN3-240ENST00000631023 PPP4R1LQ9P1A2 415 aa18.89■□□□□ 0.62
CLN3-240ENST00000631023 DOPEY1Q5JWR5 2465 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 ARHGAP21Q5T5U3 1957 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 FAM234BA2RU67 622 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 CCDC154A6NI56 674 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 NPIPA2E9PIF3 369 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 NPIPA3F8WFD2 350 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 AGR2O95994 175 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 LDLRP01130 860 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 TRPC1P48995 793 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 GAS1P54826 345 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 ZNF621Q6ZSS3 439 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 MSANTD1Q6ZTZ1 278 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 CLEC4FQ8N1N0 589 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 NEIL3Q8TAT5 605 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 THOC1Q96FV9 657 aaKnown RBP18.89■□□□□ 0.61
CLN3-240ENST00000631023 SLC35A5Q9BS91 424 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 UBQLN4Q9NRR5 601 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 FLRT3Q9NZU0 649 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 DCTN4Q9UJW0 460 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 ACAD8Q9UKU7 415 aa18.89■□□□□ 0.61
CLN3-240ENST00000631023 USP9YO00507 2555 aaPredicted RBP18.88■□□□□ 0.61
CLN3-240ENST00000631023 WIPF3A6NGB9 483 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 RFXANKO14593 260 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 NGFRP08138 427 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 HPGDP15428 266 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 TBXA2RP21731 343 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 C17orf67Q0P5P2 114 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 GRAMD1BQ3KR37 738 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 CD163Q86VB7 1156 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 OR9I1Q8NGQ6 314 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 NEURL3Q96EH8 262 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 HOXD1Q9GZZ0 328 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 SLC6A15Q9H2J7 730 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 EXD2Q9NVH0 621 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 TRIM33Q9UPN9 1127 aa18.88■□□□□ 0.61
CLN3-240ENST00000631023 NCOA6Q14686 2063 aaPredicted RBP18.87■□□□□ 0.61
CLN3-240ENST00000631023 AK1P00568 194 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 TROVE2P10155 538 aaKnown RBP eCLIP18.87■□□□□ 0.61
CLN3-240ENST00000631023 GCKP35557 465 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 RPS26P62854 115 aaKnown RBP18.87■□□□□ 0.61
CLN3-240ENST00000631023 GXYLT1Q4G148 440 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 DCST2Q5T1A1 773 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 CCNJQ5T5M9 372 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 WLSQ5T9L3 541 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 SAXO2Q658L1 398 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 OR5M10Q6IEU7 315 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 GALNT10Q86SR1 603 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms