RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 CEP112Q8N8E3 955 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 OR4F6Q8NGB9 312 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 SMAP2Q8WU79 429 aaPredicted RBP13.14□□□□□ -0.31
PNKP-218ENST00000625299 S100PBPQ96BU1 408 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 GMPPAQ96IJ6 420 aaPredicted RBP13.14□□□□□ -0.31
PNKP-218ENST00000625299 HS6ST2Q96MM7 605 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 RTN4RQ9BZR6 473 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 VPS11Q9H270 941 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 PCTPQ9UKL6 214 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 AP4B1Q9Y6B7 739 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 SS18L1O75177 396 aaPredicted RBP13.13□□□□□ -0.31
PNKP-218ENST00000625299 NDUFS7O75251 213 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 SYNGR4O95473 234 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 IGHV4-39P01824 125 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 OPN1LWP04000 364 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 CD3EP07766 207 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 IL3P08700 152 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 CLK3P49761 638 aaKnown RBP13.13□□□□□ -0.31
PNKP-218ENST00000625299 TSC22D1Q15714 1073 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 METTL2BQ6P1Q9 378 aaKnown RBP13.13□□□□□ -0.31
PNKP-218ENST00000625299 MARCH3Q86UD3 253 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 GGNQ86UU5 652 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 OR7G2Q8NG99 324 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 LILRB1Q8NHL6 650 aaPredicted RBP13.13□□□□□ -0.31
PNKP-218ENST00000625299 DUSP19Q8WTR2 217 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 GIMAP4Q9NUV9 329 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 TAS2R9Q9NYW1 312 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 GDF2Q9UK05 429 aaPredicted RBP13.13□□□□□ -0.31
PNKP-218ENST00000625299 MCTS1Q9ULC4 181 aaKnown RBP13.13□□□□□ -0.31
PNKP-218ENST00000625299 ABCG2Q9UNQ0 655 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 VDAC3Q9Y277 283 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 GPR52Q9Y2T5 361 aa13.13□□□□□ -0.31
PNKP-218ENST00000625299 CCDC189A1A4V9 331 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 ZSCAN12O43309 604 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 GPRIN2O60269 458 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 FADS1O60427 444 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 DANCRP0C864 163 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 CTAGE8P0CG41 777 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 FAM157CP0CG43 387 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 TSPAN8P19075 237 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 PAFAH1B1P43034 410 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 TRA2BP62995 288 aaKnown RBP13.12□□□□□ -0.31
PNKP-218ENST00000625299 NAB1Q13506 487 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 GGTA1PQ4G0N0 100 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 TECRLQ5HYJ1 363 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 ADAM5Q6NVV9 412 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 CCDC91Q7Z6B0 441 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 CTAGE4Q8IX94 777 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 FAM9CQ8IZT9 166 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 KBTBD8Q8NFY9 601 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 OR10D3Q8NH80 312 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 ERP27Q96DN0 273 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 GPR78Q96P69 363 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 TBL1XR1Q9BZK7 514 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 ALG2Q9H553 416 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 NMRK1Q9NWW6 199 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 WHRNQ9P202 907 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 RNF14Q9UBS8 474 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 SNX6Q9UNH7 406 aa13.12□□□□□ -0.31
PNKP-218ENST00000625299 GNG14A0A1W2PPG7 69 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 CXCL13O43927 109 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 PSMB1P20618 241 aaKnown RBP13.11□□□□□ -0.31
PNKP-218ENST00000625299 TYK2P29597 1187 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 PSG6Q00889 435 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 DECR1Q16698 335 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.11□□□□□ -0.31
PNKP-218ENST00000625299 KRTAP24-1Q3LI83 254 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 C6orf52Q5T4I8 152 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 LETMD1Q6P1Q0 360 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 ATG4DQ86TL0 474 aaPredicted RBP13.11□□□□□ -0.31
PNKP-218ENST00000625299 PLD6Q8N2A8 252 aaKnown RBP13.11□□□□□ -0.31
PNKP-218ENST00000625299 STEAP2Q8NFT2 490 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 ERP44Q9BS26 406 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 OR10A4Q9H209 315 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 ESRP2Q9H6T0 727 aaKnown RBP13.11□□□□□ -0.31
PNKP-218ENST00000625299 TMEM185BQ9H7F4 350 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 BRF2Q9HAW0 419 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 FAM120CQ9NX05 1096 aaKnown RBP13.11□□□□□ -0.31
PNKP-218ENST00000625299 XPR1Q9UBH6 696 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 STOML1Q9UBI4 398 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 CDC42EP3Q9UKI2 254 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 ANK2Q01484 3957 aa13.11□□□□□ -0.31
PNKP-218ENST00000625299 HMX2A2RU54 273 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 STX16-NPEPL1H3BU86 382 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 PPP6CO00743 305 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 STX16O14662 325 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 TNFSF11O14788 317 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 SSX4O60224 188 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 PCDH7O60245 1069 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 PLOD3O60568 738 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 COQ9O75208 318 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 SMIM24O75264 130 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 NTN1O95631 604 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 OTCP00480 354 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 TUBBP07437 444 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 IL11P20809 199 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 IL32P24001 234 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 AGTR1P30556 359 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 MAGEA4P43358 317 aa13.1□□□□□ -0.31
PNKP-218ENST00000625299 SERPINB8P50452 374 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms