RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ZAR1Q86SH2 424 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 OR6Q1Q8NGQ2 317 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 DIO2Q92813 273 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 LRRC61Q9BV99 259 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 MIR1-1HGQ9H1L0 117 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 TTYH1Q9H313 450 aaPredicted RBP9.9□□□□□ -0.82
CUX1-221ENST00000622516 POT1Q9NUX5 634 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 SLC7A7Q9UM01 511 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 LIPT1Q9Y234 373 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 ZNF443Q9Y2A4 671 aaPredicted RBP9.9□□□□□ -0.82
CUX1-221ENST00000622516 ALPK2Q86TB3 2170 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 A0A0J9YY10 115 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 AP3D1O14617 1153 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 CSO75390 466 aaKnown RBP9.9□□□□□ -0.82
CUX1-221ENST00000622516 SLC2A10O95528 541 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 OCM2P0CE71 109 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 OCMP0CE72 109 aaPredicted RBP9.9□□□□□ -0.82
CUX1-221ENST00000622516 TGM4P49221 684 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 SNRPGP62308 76 aaKnown RBP9.9□□□□□ -0.82
CUX1-221ENST00000622516 FBXO43Q4G163 708 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 LIPKQ5VXJ0 399 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 USP53Q70EK8 1073 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 GDF7Q7Z4P5 450 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 CYP4Z2PQ8N1L4 340 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 OR4N2Q8NGD1 307 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 KLHDC7BQ96G42 594 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 CDCA4Q9BXL8 241 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 LMAN1LQ9HAT1 526 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 HMG20AQ9NP66 347 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 KLHL28Q9NXS3 571 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 WSB2Q9NYS7 404 aaPredicted RBP9.9□□□□□ -0.82
CUX1-221ENST00000622516 ERGIC3Q9Y282 383 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 LRP4O75096 1905 aa9.9□□□□□ -0.82
CUX1-221ENST00000622516 SMIM30A4D0T7 59 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 DUXAA6NLW8 204 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 CDC42EP2O14613 210 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 NDUFB5O43674 189 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 KIAA0513O60268 411 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 GALR3O60755 368 aaPredicted RBP9.9□□□□□ -0.83
CUX1-221ENST00000622516 GPX5O75715 221 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 HBQ1P09105 142 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 GABRA3P34903 492 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 ARFIP1P53367 373 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 ZNF846Q147U1 533 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 OR2G6Q5TZ20 316 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 CA13Q8N1Q1 262 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 MFSD4AQ8N468 514 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 COX18Q8N8Q8 333 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 TRMT61AQ96FX7 289 aaKnown RBP9.9□□□□□ -0.83
CUX1-221ENST00000622516 SLC41A3Q96GZ6 507 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 TMEM80Q96HE8 168 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 OPALINQ96PE5 141 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 ARHGDIGQ99819 225 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 CNPPD1Q9BV87 410 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 TPK1Q9H3S4 243 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 QPCTLQ9NXS2 382 aa9.9□□□□□ -0.83
CUX1-221ENST00000622516 OR5K3A6NET4 321 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 FAM183AA6NL82 134 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 ASNA1O43681 348 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 GPR75O95800 540 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 ETV5P41161 510 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 ETV1P50549 477 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 ST3GAL3Q11203 375 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 TRAM2Q15035 370 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 RGS21Q2M5E4 152 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 HEPHL1Q6MZM0 1159 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 ARMC6Q6NXE6 501 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 PARGQ86W56 976 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 ATCAYQ86WG3 371 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 OOSP2Q86WS3 158 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 TEX47Q8TBZ9 253 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 ZFPM2Q8WW38 1151 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 VMP1Q96GC9 406 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 PEX11GQ96HA9 241 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 ZNF582Q96NG8 517 aaPredicted RBP9.89□□□□□ -0.83
CUX1-221ENST00000622516 MAP3K3Q99759 626 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 KCNS3Q9BQ31 491 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 POLR2J2Q9GZM3 115 aaKnown RBP9.89□□□□□ -0.83
CUX1-221ENST00000622516 MTHFD2LQ9H903 347 aaPredicted RBP9.89□□□□□ -0.83
CUX1-221ENST00000622516 HHATLQ9HCP6 504 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 CNOT2Q9NZN8 540 aaKnown RBP9.89□□□□□ -0.83
CUX1-221ENST00000622516 RPL36Q9Y3U8 105 aaKnown RBP9.89□□□□□ -0.83
CUX1-221ENST00000622516 A0A1W2PPC4 97 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 WNT1P04628 370 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 CHRNB1P11230 501 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 ZNF10P21506 573 aaPredicted RBP9.89□□□□□ -0.83
CUX1-221ENST00000622516 ENPP1P22413 925 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 CD79BP40259 229 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 OMPP47874 163 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 CDK5Q00535 292 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 MXD1Q05195 221 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 SLC13A2Q13183 592 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 SPHARQ15513 63 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 ZNF404Q494X3 552 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 DCST2Q5T1A1 773 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 MRPL2Q5T653 305 aaKnown RBP9.89□□□□□ -0.83
CUX1-221ENST00000622516 SMARCD3Q6STE5 483 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 HSDL2Q6YN16 418 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 WDR88Q6ZMY6 472 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 PSD4Q8NDX1 1056 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms