RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 Q6ZSR6 202 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 C19orf18Q8NEA5 215 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 ATP6V1C2Q8NEY4 427 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 OR4D11Q8NGI4 311 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 RERGQ96A58 199 aaPredicted RBP13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 CDCA3Q99618 268 aaPredicted RBP13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 FOXQ1Q9C009 403 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 C2orf42Q9NWW7 574 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 ACSL5Q9ULC5 683 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 LOC105369274A0A096LPK9 316 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 LOC102723532A0A0G2JNH3 316 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 C2CD4DB7Z1M9 353 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 PLD2O14939 933 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 ADAMDEC1O15204 470 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 CCNB2O95067 398 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 ZNF888P0CJ79 500 aaPredicted RBP13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 UQCRC2P22695 453 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 NTSP30990 170 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 ITGA1P56199 1179 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 PTGES3Q15185 160 aaKnown RBP13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 GPR68Q15743 365 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 TRIQKQ629K1 86 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 SAXO2Q658L1 398 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 USP53Q70EK8 1073 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 OR4N4Q8N0Y3 316 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 OR2L3Q8NG85 312 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 LMX1AQ8TE12 382 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 SPACA7Q96KW9 195 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 AICDAQ9GZX7 198 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 MVB12BQ9H7P6 319 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 SLC35C2Q9NQQ7 365 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 HRASLS2Q9NWW9 162 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 LRRK1Q38SD2 2015 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 TMEM229AB2RXF0 380 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 PLOD3O60568 738 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 FCMRO60667 390 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 FOSL2P15408 326 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 RPS5P46782 204 aaKnown RBP13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 PSPHP78330 225 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 ERV3-1Q14264 604 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 SEC23BQ15437 767 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 EOGTQ5NDL2 527 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 C22orf42Q6IC83 251 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 FAHD1Q6P587 224 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 GHDCQ8N2G8 530 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 CHCHD4Q8N4Q1 142 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 MRGPRX1Q96LB2 322 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 C19orf43Q9BQ61 176 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 ING3Q9NXR8 418 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 GLTPQ9NZD2 209 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 CLEC1BQ9P126 229 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 APOBEC3BQ9UH17 382 aaKnown RBP13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 CORO2BQ9UQ03 480 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 HMGN4O00479 90 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 AIFM1O95831 613 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 NDUFV2P19404 249 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 CMPK1P30085 196 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 MLLT3P42568 568 aaPredicted RBP13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 CSNK2BP67870 215 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 COMTD1Q86VU5 262 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 VRK2Q86Y07 508 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 OR6C4Q8NGE1 309 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 CNRIP1Q96F85 164 aaPredicted RBP13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 RSPO3Q9BXY4 272 aaPredicted RBP13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 ACER3Q9NUN7 267 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 DMDP11532 3685 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 A0A1W2PQF6 199 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 EVI2BP34910 448 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 DCST1Q5T197 706 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 IDO2Q6ZQW0 420 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 ZNF765Q7L2R6 523 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 ZNF367Q7RTV3 350 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 C16orf62Q7Z3J2 963 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 ATCAYQ86WG3 371 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 TCEANCQ8N8B7 351 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 SLC38A3Q99624 504 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 FNDC11Q9BVV2 318 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 TEX101Q9BY14 249 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 YARS2Q9Y2Z4 477 aaKnown RBP13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 KLK4Q9Y5K2 254 aa13.57□□□□□ -0.24
SHROOM1-208ENST00000617339 FAM170BA6NMN3 283 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 MRPS14O60783 128 aaKnown RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 IFNA14P01570 189 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 THEGLP0DJG4 465 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 PSMA1P25786 263 aaKnown RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 ETV6P41212 452 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 RPL6Q02878 288 aaKnown RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 MINDY4Q4G0A6 757 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 ZNF658BQ4V348 819 aaPredicted RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 PLEKHM3Q6ZWE6 761 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 WDR92Q96MX6 357 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 POLR2J2Q9GZM3 115 aaKnown RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 CNIH4Q9P003 139 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 PLA2G10O15496 165 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 TLX2O43763 284 aaPredicted RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 CTSBP07858 339 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 ZNF57Q68EA5 555 aaPredicted RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 FAM92BQ6ZTR7 304 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 IQCHQ86VS3 1027 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms