RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 DLGAP1O14490 977 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 FFAR1O14842 300 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 RASAL1O95294 804 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 IFNW1P05000 195 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 THBS1P07996 1170 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 NPIPA8P0DM63 369 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 ZNF23P17027 643 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 EEF1A1P68104 462 aaKnown RBP13.19□□□□□ -0.3
USP39-220ENST00000613444 PLAURQ03405 335 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 NRF1Q16656 503 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 PAPD4Q6PIY7 484 aaKnown RBP13.19□□□□□ -0.3
USP39-220ENST00000613444 HS3ST5Q8IZT8 346 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 LCORQ96JN0 433 aaPredicted RBP13.19□□□□□ -0.3
USP39-220ENST00000613444 BARD1Q99728 777 aaKnown RBP13.19□□□□□ -0.3
USP39-220ENST00000613444 WWTR1Q9GZV5 400 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 RLIMQ9NVW2 624 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 COPS7AQ9UBW8 275 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 IFT52Q9Y366 437 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 PTRH2Q9Y3E5 179 aaKnown RBP13.19□□□□□ -0.3
USP39-220ENST00000613444 U3KQV3 271 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 FRG2CA6NGY1 282 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 OR6C76A6NM76 312 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 M0R3H8 397 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 GNGT2O14610 69 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 DNAJB5O75953 348 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 YAP1P46937 504 aaKnown RBP13.18□□□□□ -0.3
USP39-220ENST00000613444 NPTX1Q15818 432 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.18□□□□□ -0.3
USP39-220ENST00000613444 ZNF836Q6ZNA1 936 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 TSPYL5Q86VY4 417 aaPredicted RBP13.18□□□□□ -0.3
USP39-220ENST00000613444 MARCH9Q86YJ5 346 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 PEX5LQ8IYB4 626 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 OR6T1Q8NGN1 323 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 ZNF597Q96LX8 424 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 ZNF347Q96SE7 839 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 ARHGDIGQ99819 225 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 KCND3Q9UK17 655 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 C2orf92A0A1B0GVN3 265 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 H0YJX3 145 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 EI24O14681 340 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 TO15178 435 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 DBIP07108 87 aaKnown RBP13.18□□□□□ -0.3
USP39-220ENST00000613444 CEACAM1P13688 526 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 ITGA2P17301 1181 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 RHCEP18577 417 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 RRM2P31350 389 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 NHLH1Q02575 133 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 FLYWCH1Q4VC44 716 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 SHQ1Q6PI26 577 aaKnown RBP13.18□□□□□ -0.3
USP39-220ENST00000613444 TMPRSS12Q86WS5 348 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 SVOPLQ8N434 492 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 PACRGLQ8N7B6 248 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 OR5K1Q8NHB7 308 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 VANGL1Q8TAA9 524 aaPredicted RBP13.18□□□□□ -0.3
USP39-220ENST00000613444 CT55Q8WUE5 264 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 LPAR4Q99677 370 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 NRSN2Q9GZP1 204 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 ACAD8Q9UKU7 415 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 OR10H1Q9Y4A9 318 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 PCDHGA10Q9Y5H3 936 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 HS3ST3B1Q9Y662 390 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 HEATR5AQ86XA9 2040 aa13.18□□□□□ -0.3
USP39-220ENST00000613444 G3V2T6 193 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 TPST2O60704 377 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 SEC24DO94855 1032 aaPredicted RBP13.17□□□□□ -0.3
USP39-220ENST00000613444 NID1P14543 1247 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 IL7RP16871 459 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 SLC26A5P58743 744 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 DCAF7P61962 342 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 PCOLCEQ15113 449 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 TMEM164Q5U3C3 297 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 ANKRD34AQ69YU3 496 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 ZDHHC13Q8IUH4 622 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 C17orf47Q8NEP4 570 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 OR4C15Q8NGM1 316 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 PHF10Q8WUB8 498 aaKnown RBP13.17□□□□□ -0.3
USP39-220ENST00000613444 GAL3ST4Q96RP7 486 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 PIP5K1AQ99755 562 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 G6PC3Q9BUM1 346 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 B3GNT4Q9C0J1 378 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 ACER3Q9NUN7 267 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 C19orf25Q9UFG5 118 aaPredicted RBP13.17□□□□□ -0.3
USP39-220ENST00000613444 TESMINQ9Y4I5 508 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 LYVE1Q9Y5Y7 322 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 PCSK5Q92824 1860 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 TMEM200CA6NKL6 621 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 TERTO14746 1132 aaKnown RBP13.17□□□□□ -0.3
USP39-220ENST00000613444 BCAS1O75363 584 aaPredicted RBP13.17□□□□□ -0.3
USP39-220ENST00000613444 TNFSF15O95150 251 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 RAB40ALP0C0E4 278 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 CCNYL3P0C7X3 344 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 DNAJA1P31689 397 aaKnown RBP13.17□□□□□ -0.3
USP39-220ENST00000613444 LIMS1P48059 325 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 RFX3P48380 749 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 HMGA2P52926 109 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 RNF4P78317 190 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 PPP2R2BQ00005 443 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 LAPTM4AQ15012 233 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 LARS2Q15031 903 aaKnown RBP13.17□□□□□ -0.3
USP39-220ENST00000613444 ZNF141Q15928 474 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms