RNA–Protein interactions for RNA: ENST00000612417.4

CDH1-213, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 2,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-213ENST00000612417 NACC2Q96BF6 587 aa13.74□□□□□ -0.21
CDH1-213ENST00000612417 OTUB1Q96FW1 271 aaPredicted RBP13.74□□□□□ -0.21
CDH1-213ENST00000612417 AGAP4Q96P64 663 aa13.74□□□□□ -0.21
CDH1-213ENST00000612417 OR7D2Q96RA2 312 aa13.74□□□□□ -0.21
CDH1-213ENST00000612417 CTRCQ99895 268 aa13.74□□□□□ -0.21
CDH1-213ENST00000612417 YIPF4Q9BSR8 244 aa13.74□□□□□ -0.21
CDH1-213ENST00000612417 SRRQ9GZT4 340 aa13.74□□□□□ -0.21
CDH1-213ENST00000612417 PCOLCE2Q9UKZ9 415 aa13.74□□□□□ -0.21
CDH1-213ENST00000612417 GRIP1Q9Y3R0 1128 aa13.74□□□□□ -0.21
CDH1-213ENST00000612417 CMAHPQ9Y471 501 aa13.74□□□□□ -0.21
CDH1-213ENST00000612417 PCDHGB2Q9Y5G2 931 aa13.74□□□□□ -0.21
CDH1-213ENST00000612417 SLCO1B1Q9Y6L6 691 aa13.74□□□□□ -0.21
CDH1-213ENST00000612417 SPTY2D1-AS1A0A0U1RR47 76 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 ISM1B1AKI9 464 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 KDM4EB2RXH2 506 aaPredicted RBP13.73□□□□□ -0.21
CDH1-213ENST00000612417 CYP7B1O75881 506 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 NR2F6P10588 404 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 HOXB3P14651 431 aaPredicted RBP13.73□□□□□ -0.21
CDH1-213ENST00000612417 MPIP34949 423 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 TAS2R41P59536 307 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 EIF2B5Q13144 721 aaKnown RBP13.73□□□□□ -0.21
CDH1-213ENST00000612417 FZD2Q14332 565 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 TRAM2Q15035 370 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 PLK5Q496M5 336 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 SMUG1Q53HV7 270 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 PRPF38BQ5VTL8 546 aaKnown RBP13.73□□□□□ -0.21
CDH1-213ENST00000612417 TAF8Q7Z7C8 310 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 SPEM1Q8N4L4 309 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 FBXL6Q8N531 539 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 CELF2-AS1Q8N7Q2 184 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 MFSD9Q8NBP5 474 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 C16orf58Q96GQ5 468 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 ZNF681Q96N22 645 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 GSDMCQ9BYG8 508 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 PRRG3Q9BZD7 231 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 HOXD1Q9GZZ0 328 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 SAP130Q9H0E3 1048 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 SRMSQ9H3Y6 488 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 EGLN3Q9H6Z9 239 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 MOV10Q9HCE1 1003 aaKnown RBP13.73□□□□□ -0.21
CDH1-213ENST00000612417 SPHK1Q9NYA1 384 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 KCNE3Q9Y6H6 103 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 SDK1Q7Z5N4 2213 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 PLD2O14939 933 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 PROM1O43490 865 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 ALPPP05187 535 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 MSL3P1P0C860 447 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 ALPPL2P10696 532 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 PEBP1P30086 187 aaKnown RBP13.73□□□□□ -0.21
CDH1-213ENST00000612417 ZNF750Q32MQ0 723 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 PRRT3Q5FWE3 981 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 ZNF311Q5JNZ3 666 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 C18orf63Q68DL7 685 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 ZNF425Q6IV72 752 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 LAPTM4BQ86VI4 370 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 OR8H2Q8N162 312 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 ANKK1Q8NFD2 765 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 OR8D4Q8NGM9 314 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 ELP4Q96EB1 424 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 SLC38A2Q96QD8 506 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 MACROD1Q9BQ69 325 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 GIMAP4Q9NUV9 329 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 MUTYHQ9UIF7 546 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 KLF15Q9UIH9 416 aa13.73□□□□□ -0.21
CDH1-213ENST00000612417 EXOSC1Q9Y3B2 195 aaKnown RBP13.73□□□□□ -0.21
CDH1-213ENST00000612417 SF3B6Q9Y3B4 125 aaKnown RBP13.73□□□□□ -0.21
CDH1-213ENST00000612417 SSX4O60224 188 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 CDRT1O95170 752 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 STATHP02808 62 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 CHRM5P08912 532 aaPredicted RBP13.72□□□□□ -0.21
CDH1-213ENST00000612417 CERS1P27544 350 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 PRKAR1BP31321 381 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 PTGER1P34995 402 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 MTNR1AP48039 350 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 SLC9A3P48764 834 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 RPL6Q02878 288 aaKnown RBP13.72□□□□□ -0.21
CDH1-213ENST00000612417 ST3GAL3Q11203 375 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 CARTPTQ16568 116 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 GLYR1Q49A26 553 aaPredicted RBP13.72□□□□□ -0.21
CDH1-213ENST00000612417 FAAH2Q6GMR7 532 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 HMGN2P46Q86SG4 172 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 ZNF485Q8NCK3 441 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 NUP43Q8NFH3 380 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 GPBAR1Q8TDU6 330 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 TM9SF4Q92544 642 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 RNFT2Q96EX2 444 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 QRSL1Q9H0R6 528 aaKnown RBP13.72□□□□□ -0.21
CDH1-213ENST00000612417 CHRDQ9H2X0 955 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 LYARQ9NX58 379 aaKnown RBP13.72□□□□□ -0.21
CDH1-213ENST00000612417 OR6C2Q9NZP2 312 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 PLEKHB1Q9UF11 243 aaPredicted RBP13.72□□□□□ -0.21
CDH1-213ENST00000612417 POU2F3Q9UKI9 436 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 CHST2Q9Y4C5 530 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 N6AMT1Q9Y5N5 214 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 SPIN1Q9Y657 262 aaPredicted RBP13.72□□□□□ -0.21
CDH1-213ENST00000612417 CEP192Q8TEP8 1941 aa13.72□□□□□ -0.21
CDH1-213ENST00000612417 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.71□□□□□ -0.21
CDH1-213ENST00000612417 A6NCN8 305 aa13.71□□□□□ -0.21
CDH1-213ENST00000612417 DCNP07585 359 aaKnown RBP13.71□□□□□ -0.21
CDH1-213ENST00000612417 TSPAN19P0C672 248 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms