RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SPATA21Q7Z572 469 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 OOSP2Q86WS3 158 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 TIGD4Q8IY51 512 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 DEFB106AQ8N104 65 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 BEST3Q8N1M1 668 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 RBM15BQ8NDT2 890 aaKnown RBP3.92□□□□□ -1.78
LINC00540-201ENST00000611481 OR7G3Q8NG95 312 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 BRSK1Q8TDC3 778 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 LPGAT1Q92604 370 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 MOAP1Q96BY2 351 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 AP2M1Q96CW1 435 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 C8orf76Q96K31 380 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 HSFY1Q96LI6 401 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 TMEM68Q96MH6 324 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 PIMREGQ9BSJ6 248 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 SF3B5Q9BWJ5 86 aaKnown RBP3.92□□□□□ -1.78
LINC00540-201ENST00000611481 ZYG11BQ9C0D3 744 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 ZNF350Q9GZX5 532 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 DPH5Q9H2P9 285 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 MMP27Q9H306 513 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 CDCP1Q9H5V8 836 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 CATSPERBQ9H7T0 1116 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 WDR54Q9H977 334 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 SLC6A13Q9NSD5 602 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 SLC35D1Q9NTN3 355 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 ZNF701Q9NV72 531 aaPredicted RBP3.92□□□□□ -1.78
LINC00540-201ENST00000611481 TRPC4Q9UBN4 977 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 LHX3Q9UBR4 397 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 MTRF1LQ9UGC7 380 aaKnown RBP3.92□□□□□ -1.78
LINC00540-201ENST00000611481 TEKT2Q9UIF3 430 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 CLCA3PQ9Y6N3 262 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 HEATR5AQ86XA9 2040 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 ZNF407Q9C0G0 2248 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 DYNC2H1Q8NCM8 4307 aaKnown RBP3.91□□□□□ -1.78
LINC00540-201ENST00000611481 IGLV3-10A0A075B6K4 115 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 TRBV5-3A0A0A0MS03 114 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 CXorf51AA0A1B0GTR3 108 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 OR6C74A6NCV1 312 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 I6L893 689 aaPredicted RBP3.91□□□□□ -1.78
LINC00540-201ENST00000611481 AP3B1O00203 1094 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 KDELR3O43731 214 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 SLC25A17O43808 307 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 KIAA0513O60268 411 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 TSC22D2O75157 780 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 CCDC166P0CW27 439 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 MMP9P14780 707 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 ST6GAL1P15907 406 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 POLR2CP19387 275 aaPredicted RBP3.91□□□□□ -1.78
LINC00540-201ENST00000611481 ITGAXP20702 1163 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 HNF1AP20823 631 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 LHCGRP22888 699 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 IDUAP35475 653 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 ACVR1BP36896 505 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 MAGEA4P43358 317 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 GCLMP48507 274 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 SULT1E1P49888 294 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 ENTPD1P49961 510 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 CLCNKAP51800 687 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 NR0B1P51843 470 aaKnown RBP3.91□□□□□ -1.78
LINC00540-201ENST00000611481 GAS1P54826 345 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 NME5P56597 212 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 POLR2LP62875 67 aaKnown RBP3.91□□□□□ -1.78
LINC00540-201ENST00000611481 RPL36AP83881 106 aaKnown RBP3.91□□□□□ -1.78
LINC00540-201ENST00000611481 OC90Q02509 493 aaPredicted RBP3.91□□□□□ -1.78
LINC00540-201ENST00000611481 EGR4Q05215 589 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 FGFBP1Q14512 234 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 DEFB110Q30KQ9 67 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 FBXL19-AS1Q494R0 122 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 CCDC40Q4G0X9 1142 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 CMPK2Q5EBM0 449 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 TEX35Q5T0J7 233 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 CCDC183Q5T5S1 534 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 MALRD1Q5VYJ5 2156 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 CYB5R2Q6BCY4 276 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 SLC25A25Q6KCM7 469 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 CCBE1Q6UXH8 406 aaPredicted RBP3.91□□□□□ -1.78
LINC00540-201ENST00000611481 CDHR3Q6ZTQ4 885 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 KCTD9Q7L273 389 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 GPAT4Q86UL3 456 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 PRSS58Q8IYP2 241 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 FBXW8Q8N3Y1 598 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 AMER3Q8N944 861 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 ADPRHL1Q8NDY3 354 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 DNAAF1Q8NEP3 725 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 LPCAT1Q8NF37 534 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 NEK11Q8NG66 645 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 OR10S1Q8NGN2 331 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 MSI2Q96DH6 328 aaKnown RBP3.91□□□□□ -1.78
LINC00540-201ENST00000611481 HES6Q96HZ4 224 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 COX14Q96I36 57 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 ZNF830Q96NB3 372 aaPredicted RBP3.91□□□□□ -1.78
LINC00540-201ENST00000611481 OLFM1Q99784 485 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 UTP23Q9BRU9 249 aaKnown RBP3.91□□□□□ -1.78
LINC00540-201ENST00000611481 ELOVL1Q9BW60 279 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 ATP13A3Q9H7F0 1226 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 VPS37BQ9H9H4 285 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 IARS2Q9NSE4 1012 aaKnown RBP3.91□□□□□ -1.78
LINC00540-201ENST00000611481 CTSFQ9UBX1 484 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 SLC23A2Q9UGH3 650 aa3.91□□□□□ -1.78
LINC00540-201ENST00000611481 DOCK4Q8N1I0 1966 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms