RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	CTNS	O60931	367 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	LDB3	O75112	727 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	CCNB2	O95067	398 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	GADD45G	O95257	159 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	NADK	O95544	446 aa	Predicted RBP	10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	ADA	P00813	363 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	HNRNPC	P07910	306 aa	Known RBP eCLIP	10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	FH	P07954	510 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	SPTB	P11277	2137 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	FGF5	P12034	268 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	CD36	P16671	472 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	FBL	P22087	321 aa	Known RBP	10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	IDUA	P35475	653 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	OR1D4	P47884	311 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	MAPK10	P53779	464 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	CDH12	P55289	794 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	MC2R	Q01718	297 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	OXA1L	Q15070	435 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	TRIP6	Q15654	476 aa	Known RBP	10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	SMN1	Q16637	294 aa	Known RBP	10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	SYT16	Q17RD7	645 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	PWWP2B	Q6NUJ5	590 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	ADCK1	Q86TW2	530 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	SLC44A2	Q8IWA5	706 aa	Predicted RBP	10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	OR4N5	Q8IXE1	308 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	MOAP1	Q96BY2	351 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	OR1F2P	Q96R84	312 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	CMKLR1	Q99788	373 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	YIPF2	Q9BWQ6	316 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	STRADB	Q9C0K7	418 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	SLIRP	Q9GZT3	109 aa	Known RBP	10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	RASSF1	Q9NS23	344 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	SIRT3	Q9NTG7	399 aa	Predicted RBP	10.9	□□□□□ -0.66
VRK3-223	ENST00000601341	DSPP	Q9NZW4	1301 aa		10.9	□□□□□ -0.66
VRK3-223	ENST00000601341		A0A1W2PS29	197 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	ISPD	A4D126	451 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	SAGE2P	A6NJ88	616 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	ZAR1L	A6NP61	321 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	PROB1	E7EW31	1015 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	TAF4	O00268	1085 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	HYAL3	O43820	417 aa	Predicted RBP	10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	B4GALT2	O60909	372 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	CD97	P48960	835 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	CCT3	P49368	545 aa	Known RBP	10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	HSD17B7	P56937	341 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	INSM1	Q01101	510 aa	Predicted RBP	10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	DUSP2	Q05923	314 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	SLC13A2	Q13183	592 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	IRF3	Q14653	427 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	EXOC3L2	Q2M3D2	409 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	TIMM50	Q3ZCQ8	353 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	C1orf189	Q5VU69	101 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	ZNF770	Q6IQ21	691 aa	Predicted RBP	10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	BHLHB9	Q6PI77	547 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	TMEM64	Q6YI46	380 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	CCDC81	Q6ZN84	652 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	USP43	Q70EL4	1123 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	MED25	Q71SY5	747 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	ZNF367	Q7RTV3	350 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	GLRX5	Q86SX6	157 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	LACC1	Q8IV20	430 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	SHISA5	Q8N114	240 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	MFSD4A	Q8N468	514 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	LINC00471	Q8N535	108 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	AMER2	Q8N7J2	671 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	BMPER	Q8N8U9	685 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	OR9A2	Q8NGT5	310 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	OR5AK3P	Q8NH89	298 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	ANKRD9	Q96BM1	317 aa	Predicted RBP	10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	CLIP3	Q96DZ5	547 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	ZHX1-C8orf76	Q96EF9	292 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	RBCK1	Q9BYM8	510 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	C3orf14	Q9HBI5	128 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	PRTFDC1	Q9NRG1	225 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	RHBDL2	Q9NX52	303 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	IMPAD1	Q9NX62	359 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	CCDC59	Q9P031	241 aa	Known RBP	10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	TRPC4	Q9UBN4	977 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	ACAD8	Q9UKU7	415 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	MGAT4B	Q9UQ53	548 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	SH3GLB1	Q9Y371	365 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	SPEG	Q15772	3267 aa		10.9	□□□□□ -0.67
VRK3-223	ENST00000601341	FUOM	A2VDF0	154 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	PRAMEF25	A6NGN4	478 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	C5orf58	C9J3I9	102 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341		J3QRK9	145 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	SLITRK5	O94991	958 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	ATP1B1	P05026	303 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	SLC35E2	P0CK97	266 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	BCAP31	P51572	246 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	LIMK1	P53667	647 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	SNRPG	P62308	76 aa	Known RBP	10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	PRR5	P85299	388 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	ID2	Q02363	134 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	STX4	Q12846	297 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	BIK	Q13323	160 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	ARHGAP40	Q5TG30	622 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	CEACAM20	Q6UY09	585 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	SLC46A3	Q7Z3Q1	461 aa		10.89	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms