RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 FBXO34Q9NWN3 711 aa17.72■□□□□ 0.43
UPF1-209ENST00000600310 FLRT3Q9NZU0 649 aa17.72■□□□□ 0.43
UPF1-209ENST00000600310 ABCG2Q9UNQ0 655 aa17.72■□□□□ 0.43
UPF1-209ENST00000600310 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.72■□□□□ 0.43
UPF1-209ENST00000600310 FADS1O60427 444 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 TRIM3O75382 744 aaPredicted RBP17.71■□□□□ 0.43
UPF1-209ENST00000600310 ATP6V1C1P21283 382 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 PPIBP23284 216 aaKnown RBP17.71■□□□□ 0.43
UPF1-209ENST00000600310 EVI2BP34910 448 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 KCNJ2P63252 427 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 STX5Q13190 355 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 MMEL1Q495T6 779 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 ZNF324BQ6AW86 544 aaPredicted RBP17.71■□□□□ 0.43
UPF1-209ENST00000600310 PRICKLE2Q7Z3G6 844 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 GALNT10Q86SR1 603 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 TREML1Q86YW5 311 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 FAR1Q8WVX9 515 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 TMEM41AQ96HV5 264 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 CGREF1Q99674 301 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 OSBPL11Q9BXB4 747 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 RAD21L1Q9H4I0 556 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 IL1RL2Q9HB29 575 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 AGPAT4Q9NRZ5 378 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 TUBA8Q9NY65 449 aaPredicted RBP17.71■□□□□ 0.43
UPF1-209ENST00000600310 KLRF1Q9NZS2 232 aa17.71■□□□□ 0.43
UPF1-209ENST00000600310 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.71■□□□□ 0.43
UPF1-209ENST00000600310 BOKQ9UMX3 212 aaPredicted RBP17.71■□□□□ 0.43
UPF1-209ENST00000600310 GLSO94925 669 aaPredicted RBP17.7■□□□□ 0.42
UPF1-209ENST00000600310 NGFRP08138 427 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 GUSBP08236 651 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 CRATP43155 626 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 FUT5Q11128 374 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 FADDQ13158 208 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 RGNQ15493 299 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 HYAL4Q2M3T9 481 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 GRAMD1BQ3KR37 738 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 RUNDC3AQ59EK9 446 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 RNFT1Q5M7Z0 435 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 REP15Q6BDI9 236 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 C16orf62Q7Z3J2 963 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 PACS2Q86VP3 889 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 OR4C3Q8NH37 302 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 NR4A3Q92570 626 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 ROPN1LQ96C74 230 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 TTTY12Q9BZ98 90 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 ZNF350Q9GZX5 532 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 ZFP64Q9NPA5 681 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 UBQLN4Q9NRR5 601 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 LIPT1Q9Y234 373 aa17.7■□□□□ 0.42
UPF1-209ENST00000600310 PRAMEF27A3QJZ7 478 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 LRRC3CA6NJW4 275 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 ADAM10O14672 748 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 MRASO14807 208 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 SLC28A2O43868 658 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 STX11O75558 287 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 DCTN3O75935 186 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 NPPAP01160 153 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 BMP2P12643 396 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 COX4I1P13073 169 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 ETFAP13804 333 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 ZNF24P17028 368 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 TBXA2RP21731 343 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 RFC3P40938 356 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 GAS1P54826 345 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 DSTNP60981 165 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 ALDH6A1Q02252 535 aaKnown RBP17.69■□□□□ 0.42
UPF1-209ENST00000600310 PLGLB1Q02325 96 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 TLE1Q04724 770 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 TRMT5Q32P41 509 aaKnown RBP17.69■□□□□ 0.42
UPF1-209ENST00000600310 FNDC7Q5VTL7 733 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 AP1ARQ63HQ0 302 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 POU5F2Q8N7G0 328 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 PCYOX1LQ8NBM8 494 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 CCDC197Q8NCU1 140 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 ZNF597Q96LX8 424 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 ANKRD27Q96NW4 1050 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 LRRC37BQ96QE4 947 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 CPPED1Q9BRF8 314 aaPredicted RBP17.69■□□□□ 0.42
UPF1-209ENST00000600310 HOXD1Q9GZZ0 328 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 GALNT9Q9HCQ5 603 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 POLE3Q9NRF9 147 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 OLAHQ9NV23 265 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 THUMPD1Q9NXG2 353 aaKnown RBP17.69■□□□□ 0.42
UPF1-209ENST00000600310 CORO2BQ9UQ03 480 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 CFAP46Q8IYW2 2715 aa17.69■□□□□ 0.42
UPF1-209ENST00000600310 EXPH5Q8NEV8 1989 aa17.68■□□□□ 0.42
UPF1-209ENST00000600310 EVPLLA8MZ36 301 aa17.68■□□□□ 0.42
UPF1-209ENST00000600310 ALG1L2C9J202 215 aa17.68■□□□□ 0.42
UPF1-209ENST00000600310 NPIPB9F8W1W9 429 aa17.68■□□□□ 0.42
UPF1-209ENST00000600310 ACOT7O00154 380 aa17.68■□□□□ 0.42
UPF1-209ENST00000600310 SNPHO15079 494 aa17.68■□□□□ 0.42
UPF1-209ENST00000600310 OXSR1O95747 527 aaPredicted RBP17.68■□□□□ 0.42
UPF1-209ENST00000600310 GPX2P18283 190 aa17.68■□□□□ 0.42
UPF1-209ENST00000600310 MST1P26927 711 aa17.68■□□□□ 0.42
UPF1-209ENST00000600310 PRDX6P30041 224 aa17.68■□□□□ 0.42
UPF1-209ENST00000600310 MASP1P48740 699 aa17.68■□□□□ 0.42
UPF1-209ENST00000600310 CLK3P49761 638 aaKnown RBP17.68■□□□□ 0.42
UPF1-209ENST00000600310 PPIAP62937 165 aaKnown RBP17.68■□□□□ 0.42
UPF1-209ENST00000600310 TIGD3Q6B0B8 471 aa17.68■□□□□ 0.42
UPF1-209ENST00000600310 APOOLQ6UXV4 268 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms