RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 ZNF763Q0D2J5 394 aa17.01■□□□□ 0.31
PNKP-213ENST00000599543 ZNF155Q12901 538 aaPredicted RBP17.01■□□□□ 0.31
PNKP-213ENST00000599543 CEBPEQ15744 281 aa17.01■□□□□ 0.31
PNKP-213ENST00000599543 NOXRED1Q6NXP6 359 aa17.01■□□□□ 0.31
PNKP-213ENST00000599543 NPSR1Q6W5P4 371 aa17.01■□□□□ 0.31
PNKP-213ENST00000599543 SLC44A2Q8IWA5 706 aaPredicted RBP17.01■□□□□ 0.31
PNKP-213ENST00000599543 OR7G2Q8NG99 324 aa17.01■□□□□ 0.31
PNKP-213ENST00000599543 CLHC1Q8NHS4 586 aa17.01■□□□□ 0.31
PNKP-213ENST00000599543 C11orf24Q96F05 449 aaPredicted RBP17.01■□□□□ 0.31
PNKP-213ENST00000599543 ZFP3Q96NJ6 502 aa17.01■□□□□ 0.31
PNKP-213ENST00000599543 TM9SF2Q99805 663 aa17.01■□□□□ 0.31
PNKP-213ENST00000599543 FOXC2Q99958 501 aa17.01■□□□□ 0.31
PNKP-213ENST00000599543 MIEF1Q9NQG6 463 aa17.01■□□□□ 0.31
PNKP-213ENST00000599543 CCM2LQ9NUG4 571 aaPredicted RBP17.01■□□□□ 0.31
PNKP-213ENST00000599543 C1orf109Q9NX04 203 aa17.01■□□□□ 0.31
PNKP-213ENST00000599543 FBXL2Q9UKC9 423 aa17.01■□□□□ 0.31
PNKP-213ENST00000599543 VPS13CQ709C8 3753 aa17.01■□□□□ 0.31
PNKP-213ENST00000599543 FAM221AA4D161 298 aa17■□□□□ 0.31
PNKP-213ENST00000599543 LSM1O15116 133 aaKnown RBP17■□□□□ 0.31
PNKP-213ENST00000599543 TSPAN2O60636 221 aa17■□□□□ 0.31
PNKP-213ENST00000599543 COQ9O75208 318 aa17■□□□□ 0.31
PNKP-213ENST00000599543 GRK2P25098 689 aa17■□□□□ 0.31
PNKP-213ENST00000599543 NCBP2P52298 156 aaKnown RBP eCLIP17■□□□□ 0.312e-9■■■■□ 25.4
PNKP-213ENST00000599543 PNLIPRP2P54317 469 aa17■□□□□ 0.31
PNKP-213ENST00000599543 GFRA1P56159 465 aa17■□□□□ 0.31
PNKP-213ENST00000599543 C2orf80Q0P641 193 aa17■□□□□ 0.31
PNKP-213ENST00000599543 PRSS53Q2L4Q9 553 aa17■□□□□ 0.31
PNKP-213ENST00000599543 RFTN2Q52LD8 501 aaPredicted RBP17■□□□□ 0.31
PNKP-213ENST00000599543 OR5M10Q6IEU7 315 aa17■□□□□ 0.31
PNKP-213ENST00000599543 CHDHQ8NE62 594 aaPredicted RBP17■□□□□ 0.31
PNKP-213ENST00000599543 GFM2Q969S9 779 aaKnown RBP17■□□□□ 0.31
PNKP-213ENST00000599543 EFHD2Q96C19 240 aaPredicted RBP17■□□□□ 0.31
PNKP-213ENST00000599543 EGLN2Q96KS0 407 aa17■□□□□ 0.31
PNKP-213ENST00000599543 SFXN2Q96NB2 322 aa17■□□□□ 0.31
PNKP-213ENST00000599543 C1orf50Q9BV19 199 aa17■□□□□ 0.31
PNKP-213ENST00000599543 SFXN3Q9BWM7 321 aa17■□□□□ 0.31
PNKP-213ENST00000599543 ACBD3Q9H3P7 528 aa17■□□□□ 0.31
PNKP-213ENST00000599543 LIME1Q9H400 295 aa17■□□□□ 0.31
PNKP-213ENST00000599543 SIRT5Q9NXA8 310 aa17■□□□□ 0.31
PNKP-213ENST00000599543 MARCOQ9UEW3 520 aaPredicted RBP17■□□□□ 0.31
PNKP-213ENST00000599543 BAIAP2L1Q9UHR4 511 aa17■□□□□ 0.31
PNKP-213ENST00000599543 RAP2CQ9Y3L5 183 aa17■□□□□ 0.31
PNKP-213ENST00000599543 ACANP16112 2415 aa16.99■□□□□ 0.31
PNKP-213ENST00000599543 CLCA1A8K7I4 914 aa16.99■□□□□ 0.31
PNKP-213ENST00000599543 HMGB1P1B2RPK0 211 aaPredicted RBP16.99■□□□□ 0.31
PNKP-213ENST00000599543 KITP10721 976 aa16.99■□□□□ 0.31
PNKP-213ENST00000599543 DNASE1P24855 282 aa16.99■□□□□ 0.31
PNKP-213ENST00000599543 CPA2P48052 419 aa16.99■□□□□ 0.31
PNKP-213ENST00000599543 SLC18A1P54219 525 aa16.99■□□□□ 0.31
PNKP-213ENST00000599543 KIAA0040Q15053 153 aa16.99■□□□□ 0.31
PNKP-213ENST00000599543 XKR7Q5GH72 579 aa16.99■□□□□ 0.31
PNKP-213ENST00000599543 CDC20BQ86Y33 519 aa16.99■□□□□ 0.31
PNKP-213ENST00000599543 WNT2BQ93097 391 aa16.99■□□□□ 0.31
PNKP-213ENST00000599543 MANSC1Q9H8J5 431 aa16.99■□□□□ 0.31
PNKP-213ENST00000599543 JKAMPQ9P055 326 aa16.99■□□□□ 0.31
PNKP-213ENST00000599543 PLEKHA6Q9Y2H5 1048 aa16.99■□□□□ 0.31
PNKP-213ENST00000599543 FLNAP21333 2647 aaKnown RBP16.99■□□□□ 0.31
PNKP-213ENST00000599543 AKAP10O43572 662 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 SLITRK5O94991 958 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 RCBTB2O95199 551 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 EPXP11678 715 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 TCEA1P23193 301 aaKnown RBP16.98■□□□□ 0.31
PNKP-213ENST00000599543 DPP4P27487 766 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 NTSP30990 170 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 EVI2BP34910 448 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 MC3RP41968 323 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 STARP49675 285 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 LHX2P50458 406 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 FOXF2Q12947 444 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 DAZAP2Q15038 168 aaPredicted RBP16.98■□□□□ 0.31
PNKP-213ENST00000599543 ANKRD26P1Q6NSI1 321 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 TMEM107Q6UX40 140 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 ADGRE4PQ86SQ3 457 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 GRAMD2AQ8IUY3 354 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 OR4K17Q8NGC6 315 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 OR4N2Q8NGD1 307 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 LINC01560Q8TB33 94 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 ZNF75CPQ92670 426 aaPredicted RBP16.98■□□□□ 0.31
PNKP-213ENST00000599543 INTS12Q96CB8 462 aaKnown RBP16.98■□□□□ 0.31
PNKP-213ENST00000599543 TSSK3Q96PN8 268 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 UCN2Q96RP3 112 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 RBM24Q9BX46 236 aaKnown RBP16.98■□□□□ 0.31
PNKP-213ENST00000599543 CXXC4Q9H2H0 198 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 MYNNQ9NPC7 610 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 PPP4R1LQ9P1A2 415 aa16.98■□□□□ 0.31
PNKP-213ENST00000599543 RPH3AQ9Y2J0 694 aaPredicted RBP16.98■□□□□ 0.31
PNKP-213ENST00000599543 MRPS18CQ9Y3D5 142 aaKnown RBP16.98■□□□□ 0.31
PNKP-213ENST00000599543 A0A087WV62 115 aa16.97■□□□□ 0.31
PNKP-213ENST00000599543 MYO1GB0I1T2 1018 aa16.97■□□□□ 0.31
PNKP-213ENST00000599543 PLOD2O00469 737 aa16.97■□□□□ 0.31
PNKP-213ENST00000599543 SCO2O43819 266 aa16.97■□□□□ 0.31
PNKP-213ENST00000599543 ZNF708P17019 499 aa16.97■□□□□ 0.31
PNKP-213ENST00000599543 SDC1P18827 310 aa16.97■□□□□ 0.31
PNKP-213ENST00000599543 PRPH2P23942 346 aa16.97■□□□□ 0.31
PNKP-213ENST00000599543 CHMP24386 653 aa16.97■□□□□ 0.31
PNKP-213ENST00000599543 RPL14P50914 215 aaKnown RBP16.97■□□□□ 0.31
PNKP-213ENST00000599543 PPP2R2AP63151 447 aa16.97■□□□□ 0.31
PNKP-213ENST00000599543 PSG6Q00889 435 aa16.97■□□□□ 0.31
PNKP-213ENST00000599543 PLXDC2Q6UX71 529 aa16.97■□□□□ 0.31
PNKP-213ENST00000599543 LUZP2Q86TE4 346 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms