RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ME2P23368 584 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 HTR1EP28566 365 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 GABRA3P34903 492 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 SOX11P35716 441 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 PPICP45877 212 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 PRIM2P49643 509 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 CORO7P57737 925 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 DSTNP60981 165 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 RNF4P78317 190 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 Q0VFX4 171 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 FUT5Q11128 374 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 MYBPC3Q14896 1274 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 EBPQ15125 230 aaKnown RBP8.71□□□□□ -1.02
TRIM28-208ENST00000597172 SYPL1Q16563 259 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 DUSP5Q16690 384 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 VMACQ2NL98 169 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 GCNT6Q5T4J0 391 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 SLC6A19Q695T7 634 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 PLAG1Q6DJT9 500 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 HEPHL1Q6MZM0 1159 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 RNF111Q6ZNA4 994 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 LGI4Q8N135 537 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 ZNF441Q8N8Z8 693 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 CDRT4Q8N9R6 151 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 OR2T12Q8NG77 320 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 OR4N2Q8NGD1 307 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 FBXO30Q8TB52 745 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 M1APQ8TC57 530 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 SLC38A5Q8WUX1 472 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 XAGE5Q8WWM1 108 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 PIK3R3Q92569 461 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 SLC9A6Q92581 669 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 MCUR1Q96AQ8 359 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 REXO5Q96IC2 774 aaKnown RBP8.71□□□□□ -1.02
TRIM28-208ENST00000597172 KCTD14Q9BQ13 255 aaPredicted RBP8.71□□□□□ -1.02
TRIM28-208ENST00000597172 ITPAQ9BY32 194 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 PCDHAC1Q9H158 963 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 PIGUQ9H490 435 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 ALG2Q9H553 416 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 TMEM38AQ9H6F2 299 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 LIN28AQ9H9Z2 209 aaKnown RBP8.71□□□□□ -1.02
TRIM28-208ENST00000597172 ZNF160Q9HCG1 818 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 P4HTMQ9NXG6 502 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 PRODH2Q9UF12 536 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 SLC7A8Q9UHI5 535 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 GPR55Q9Y2T6 319 aaPredicted RBP8.71□□□□□ -1.02
TRIM28-208ENST00000597172 NSG1A0A0A6YYJ2 146 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 ELOVL7A1L3X0 281 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 DUXAA6NLW8 204 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 OR6C76A6NM76 312 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 A8MVJ9 347 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 ACOT8O14734 319 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 ASNA1O43681 348 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 DNAJA2O60884 412 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 HPP00738 406 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 ALOX5P09917 674 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 ARAFP10398 606 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 NCK1P16333 377 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 DRD5P21918 477 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 KHKP50053 298 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 CCL11P51671 97 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 CLCN2P51788 898 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 TXNL4AP83876 142 aaKnown RBP8.7□□□□□ -1.02
TRIM28-208ENST00000597172 LTBQ06643 244 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 ZNF155Q12901 538 aaPredicted RBP8.7□□□□□ -1.02
TRIM28-208ENST00000597172 ATP1A4Q13733 1029 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 TRIM25Q14258 630 aaKnown RBP8.7□□□□□ -1.02
TRIM28-208ENST00000597172 CYP51A1Q16850 503 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 BTBD16Q32M84 506 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 AP1ARQ63HQ0 302 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 OLIG3Q7RTU3 272 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 MRGPREQ86SM8 312 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 MICU2Q8IYU8 434 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 ANKFN1Q8N957 763 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 OR8K3Q8NH51 312 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 FAM110BQ8TC76 370 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 ADAMTS15Q8TE58 950 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 CDS1Q92903 461 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 VMP1Q96GC9 406 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 BTBD9Q96Q07 612 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 STACQ99469 402 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 SPATA9Q9BWV2 254 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 RSPO3Q9BXY4 272 aaPredicted RBP8.7□□□□□ -1.02
TRIM28-208ENST00000597172 WWTR1Q9GZV5 400 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 MMP25Q9NPA2 562 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 A4GALTQ9NPC4 353 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 DUSP22Q9NRW4 184 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 FBXO34Q9NWN3 711 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 EGFL7Q9UHF1 273 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 FBXL4Q9UKA2 621 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 OSGIN2Q9Y236 505 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 POMPQ9Y244 141 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 CFL2Q9Y281 166 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 PCDHGB7Q9Y5F8 929 aa8.7□□□□□ -1.02
TRIM28-208ENST00000597172 TRBV11-1A0A0K0K1C0 115 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 C2orf92A0A1B0GVN3 265 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 CFAP73A6NFT4 308 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 FCMRO60667 390 aa8.69□□□□□ -1.02
TRIM28-208ENST00000597172 ZNF354AO60765 605 aaPredicted RBP8.69□□□□□ -1.02
TRIM28-208ENST00000597172 ZFAND5O76080 213 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms