RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 FAM220BPB1ANY3 271 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 ASNA1O43681 348 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 SP1P08047 785 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 ALOX5P09917 674 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 CT45A8P0DMV1 189 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 CT45A9P0DMV2 189 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 TCN1P20061 433 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-207ENST00000597136 ME2P23368 584 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 MSX2P35548 267 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-207ENST00000597136 ZNHIT3Q15649 155 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-207ENST00000597136 DUSP5Q16690 384 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 ZNF791Q3KP31 576 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-207ENST00000597136 CT45A2Q5DJT8 189 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 ZNF766Q5HY98 468 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 NPSR1Q6W5P4 371 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 ZZZ3Q8IYH5 903 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 CYP4Z2PQ8N1L4 340 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 CISD2Q8N5K1 135 aaKnown RBP13.79□□□□□ -0.2
TRIM28-207ENST00000597136 OR4N2Q8NGD1 307 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 ADAMTS15Q8TE58 950 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 MAL2Q969L2 176 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 LCORQ96JN0 433 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-207ENST00000597136 BTBD9Q96Q07 612 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 STACQ99469 402 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 PIGUQ9H490 435 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 TMEM38AQ9H6F2 299 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 DUSP22Q9NRW4 184 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 GPR55Q9Y2T6 319 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-207ENST00000597136 POLEQ07864 2286 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 RELNP78509 3460 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 TRAV17A0A0B4J275 112 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 TTC36A6NLP5 189 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 A8MVJ9 347 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 SOX30O94993 753 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 NKX2-2O95096 273 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 ARAFP10398 606 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 HTR1EP28566 365 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 GABRA3P34903 492 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 CASRP41180 1078 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 PPICP45877 212 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 PSG6Q00889 435 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 SLC25A25Q6KCM7 469 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 MICU2Q8IYU8 434 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 C11orf65Q8NCR3 313 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 OR5M3Q8NGP4 307 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 GPR151Q8TDV0 419 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 CDS1Q92903 461 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 A4GALTQ9NPC4 353 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 HPF1Q9NWY4 346 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 PCDHGA10Q9Y5H3 936 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 NPFFR2Q9Y5X5 522 aa13.79□□□□□ -0.2
TRIM28-207ENST00000597136 ELOVL7A1L3X0 281 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 PRAMEF27A3QJZ7 478 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 TTLL8A6PVC2 850 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 SLC25A12O75746 678 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 WISP2O76076 250 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 AGR2O95994 175 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 TFPTP0C1Z6 253 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 NQO1P15559 274 aaKnown RBP13.78□□□□□ -0.2
TRIM28-207ENST00000597136 DRD5P21918 477 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 ABCD3P28288 659 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 DCAF7P61962 342 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 PMP22Q01453 160 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 RBBP4Q09028 425 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 FXNQ16595 210 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 VMACQ2NL98 169 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 ATAD3BQ5T9A4 648 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 OPN5Q6U736 354 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 PRICKLE2Q7Z3G6 844 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 GALNTL5Q7Z4T8 443 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 SLC44A2Q8IWA5 706 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-207ENST00000597136 SLC15A4Q8N697 577 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 C17orf47Q8NEP4 570 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 SLC38A5Q8WUX1 472 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 PIK3R3Q92569 461 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 CCDC124Q96CT7 223 aaKnown RBP13.78□□□□□ -0.2
TRIM28-207ENST00000597136 SNRNP40Q96DI7 357 aaKnown RBP13.78□□□□□ -0.2
TRIM28-207ENST00000597136 SCMH1Q96GD3 660 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 TAAR6Q96RI8 345 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 DEPPQ9NTK1 212 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 SLC7A8Q9UHI5 535 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 PCDHGB3Q9Y5G1 929 aa13.78□□□□□ -0.2
TRIM28-207ENST00000597136 TENM4Q6N022 2769 aa13.77□□□□□ -0.2
TRIM28-207ENST00000597136 GXYLT2A0PJZ3 443 aa13.77□□□□□ -0.21
TRIM28-207ENST00000597136 CFAP73A6NFT4 308 aa13.77□□□□□ -0.21
TRIM28-207ENST00000597136 G3V3Y1 287 aa13.77□□□□□ -0.21
TRIM28-207ENST00000597136 FBXO45P0C2W1 286 aa13.77□□□□□ -0.21
TRIM28-207ENST00000597136 FBXW4P57775 412 aa13.77□□□□□ -0.21
TRIM28-207ENST00000597136 C19orf57Q0VDD7 668 aa13.77□□□□□ -0.21
TRIM28-207ENST00000597136 FUT5Q11128 374 aa13.77□□□□□ -0.21
TRIM28-207ENST00000597136 TRIM25Q14258 630 aaKnown RBP13.77□□□□□ -0.21
TRIM28-207ENST00000597136 INPP5JQ15735 1006 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-207ENST00000597136 MAPK11Q15759 364 aa13.77□□□□□ -0.21
TRIM28-207ENST00000597136 SYPL1Q16563 259 aa13.77□□□□□ -0.21
TRIM28-207ENST00000597136 ZNF630Q2M218 657 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-207ENST00000597136 HEPHL1Q6MZM0 1159 aa13.77□□□□□ -0.21
TRIM28-207ENST00000597136 ERICH5Q6P6B1 374 aa13.77□□□□□ -0.21
TRIM28-207ENST00000597136 COX18Q8N8Q8 333 aa13.77□□□□□ -0.21
TRIM28-207ENST00000597136 TNIP2Q8NFZ5 429 aa13.77□□□□□ -0.21
TRIM28-207ENST00000597136 SLC22A8Q8TCC7 542 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms