RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 GALNT10Q86SR1 603 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 NUP43Q8NFH3 380 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 OR4K17Q8NGC6 315 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 ZFP28Q8NHY6 868 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 MTERF3Q96E29 417 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 ZBED6CLQ96FA7 236 aaPredicted RBP11.82□□□□□ -0.52
LIG1-212ENST00000596549 OTUB1Q96FW1 271 aaPredicted RBP11.82□□□□□ -0.52
LIG1-212ENST00000596549 PPP3R2Q96LZ3 170 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 PARD6BQ9BYG5 372 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 DSN1Q9H410 356 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 CALHM2Q9HA72 323 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 EML4Q9HC35 981 aaKnown RBP11.82□□□□□ -0.52
LIG1-212ENST00000596549 ACSS1Q9NUB1 689 aaPredicted RBP11.82□□□□□ -0.52
LIG1-212ENST00000596549 FAM120CQ9NX05 1096 aaKnown RBP11.82□□□□□ -0.52
LIG1-212ENST00000596549 SH3BP4Q9P0V3 963 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 ATP6V1HQ9UI12 483 aa11.82□□□□□ -0.52
LIG1-212ENST00000596549 MRPS18CQ9Y3D5 142 aaKnown RBP11.82□□□□□ -0.52
LIG1-212ENST00000596549 AKAP9Q99996 3911 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 ITM2AO43736 263 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 PEX11AO75192 247 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 UTS2O95399 124 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 TMIGD3P0DMS9 266 aaPredicted RBP11.81□□□□□ -0.52
LIG1-212ENST00000596549 CAPN3P20807 821 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 CHMP24386 653 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 UQCRC1P31930 480 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 GABRA3P34903 492 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 GCKP35557 465 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 ASMTP46597 345 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 SERPINB4P48594 390 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 DSCR4P56555 118 aaPredicted RBP11.81□□□□□ -0.52
LIG1-212ENST00000596549 DUSP5Q16690 384 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 KRT71Q3SY84 523 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 C6orf136Q5SQH8 315 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 MFSD12Q6NUT3 480 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 SZRD1Q7Z422 152 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 MARCH3Q86UD3 253 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 EXOC3L1Q86VI1 746 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 TMEM200AQ86VY9 491 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 ZZZ3Q8IYH5 903 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 CDRT4Q8N9R6 151 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 SLC16A11Q8NCK7 471 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 OR7A2PQ8NGA2 310 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 NRGNQ92686 78 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 RNASE6Q93091 150 aaKnown RBP11.81□□□□□ -0.52
LIG1-212ENST00000596549 FAM120BQ96EK7 910 aaKnown RBP11.81□□□□□ -0.52
LIG1-212ENST00000596549 UCN2Q96RP3 112 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 ZNF395Q9H8N7 513 aaPredicted RBP11.81□□□□□ -0.52
LIG1-212ENST00000596549 CRIM1Q9NZV1 1036 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 JKAMPQ9P055 326 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 MED11Q9P086 117 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 CELSR1Q9NYQ6 3014 aa11.81□□□□□ -0.52
LIG1-212ENST00000596549 IGLV3-32A0A0A0MS00 114 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 TMEM114B3SHH9 223 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 H0YC42 278 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 SYT5O00445 386 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 KCNH1O95259 989 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 OXSR1O95747 527 aaPredicted RBP11.8□□□□□ -0.52
LIG1-212ENST00000596549 LAMP1P11279 417 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 CTSSP25774 331 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 HPCAL1P37235 193 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 DGKQP52824 942 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 PRKAG1P54619 331 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 MANFP55145 182 aaKnown RBP11.8□□□□□ -0.52
LIG1-212ENST00000596549 TPD52P55327 224 aaPredicted RBP11.8□□□□□ -0.52
LIG1-212ENST00000596549 CLDN15P56746 228 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 PRR5P85299 388 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 GANABQ14697 944 aaKnown RBP11.8□□□□□ -0.52
LIG1-212ENST00000596549 MLC1Q15049 377 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 SF3B4Q15427 424 aaKnown RBP eCLIP11.8□□□□□ -0.52
LIG1-212ENST00000596549 TESK1Q15569 626 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 FLYWCH1Q4VC44 716 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 ATP6AP1LQ52LC2 224 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 TNFAIP8L3Q5GJ75 292 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 RAET1LQ5VY80 246 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 AAGABQ6PD74 315 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 FIGNL1Q6PIW4 674 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 GCNT2Q8N0V5 402 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 KRTCAP2Q8N6L1 136 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 ZNF781Q8N8C0 355 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 OR5M1Q8NGP8 315 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 GPR151Q8TDV0 419 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 SLC9A6Q92581 669 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 ZBTB9Q96C00 473 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 C1GALT1C1Q96EU7 318 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 C16orf58Q96GQ5 468 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 NPAS1Q99742 590 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 KLHDC3Q9BQ90 382 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 C20orf27Q9GZN8 174 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 FBXO34Q9NWN3 711 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 ITGB1BP2Q9UKP3 347 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 RAB21Q9UL25 225 aa11.8□□□□□ -0.52
LIG1-212ENST00000596549 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.79□□□□□ -0.52
LIG1-212ENST00000596549 OR2M5A3KFT3 312 aa11.79□□□□□ -0.52
LIG1-212ENST00000596549 TTC36A6NLP5 189 aa11.79□□□□□ -0.52
LIG1-212ENST00000596549 SHISA8B8ZZ34 492 aa11.79□□□□□ -0.52
LIG1-212ENST00000596549 EEF1E1-BLOC1S5C9J1V9 151 aa11.79□□□□□ -0.52
LIG1-212ENST00000596549 EEF1E1O43324 174 aaKnown RBP11.79□□□□□ -0.52
LIG1-212ENST00000596549 EMC8O43402 210 aa11.79□□□□□ -0.52
LIG1-212ENST00000596549 GMFGO60234 142 aa11.79□□□□□ -0.52
LIG1-212ENST00000596549 TNFSF13O75888 250 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms